miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17002 3' -55.5 NC_004333.2 + 13967 0.76 0.184187
Target:  5'- uUCAGgcggcgGCCGgUGCGcGCGAGCUGCGCg -3'
miRNA:   3'- gAGUC------UGGCaGCGCuUGCUCGACGUG- -5'
17002 3' -55.5 NC_004333.2 + 1129 0.68 0.536578
Target:  5'- gUCGGuGCCGUgcUGCGcGCGAcGUUGCACu -3'
miRNA:   3'- gAGUC-UGGCA--GCGCuUGCU-CGACGUG- -5'
17002 3' -55.5 NC_004333.2 + 3685 0.69 0.504644
Target:  5'- gUCuGAgCCGUCGCGu-CGuAGCUGCGg -3'
miRNA:   3'- gAGuCU-GGCAGCGCuuGC-UCGACGUg -5'
17002 3' -55.5 NC_004333.2 + 7802 0.69 0.473557
Target:  5'- -cCAGGCCGagCGCGGACGAGUaGUuuaGCu -3'
miRNA:   3'- gaGUCUGGCa-GCGCUUGCUCGaCG---UG- -5'
17002 3' -55.5 NC_004333.2 + 35486 0.69 0.463409
Target:  5'- -aCGGGCCGgugagCGUGccgccuGCGAGCgGCACg -3'
miRNA:   3'- gaGUCUGGCa----GCGCu-----UGCUCGaCGUG- -5'
17002 3' -55.5 NC_004333.2 + 31353 0.7 0.424008
Target:  5'- aUCAGACCGcUGcCGAGCGAcgcaGCcGCGCg -3'
miRNA:   3'- gAGUCUGGCaGC-GCUUGCU----CGaCGUG- -5'
17002 3' -55.5 NC_004333.2 + 25671 0.66 0.64668
Target:  5'- ---cGGCCGUCGCGAACGcGGCg---- -3'
miRNA:   3'- gaguCUGGCAGCGCUUGC-UCGacgug -5'
17002 3' -55.5 NC_004333.2 + 47606 0.67 0.624457
Target:  5'- uUCAGcuGCgCGUCGCcgaGAUGGGCgGCACg -3'
miRNA:   3'- gAGUC--UG-GCAGCGc--UUGCUCGaCGUG- -5'
17002 3' -55.5 NC_004333.2 + 20747 0.67 0.591198
Target:  5'- -cCGGACa-UCGCcGACGcGGCUGCGCg -3'
miRNA:   3'- gaGUCUGgcAGCGcUUGC-UCGACGUG- -5'
17002 3' -55.5 NC_004333.2 + 39806 0.68 0.525849
Target:  5'- gCUguGGCCGUC-CGAACGcgcauacccGGCUGC-Cg -3'
miRNA:   3'- -GAguCUGGCAGcGCUUGC---------UCGACGuG- -5'
17002 3' -55.5 NC_004333.2 + 20626 0.69 0.470501
Target:  5'- gUCGGGCCaauucgacgcgagcGUCGC-AACGGcGCUGCGCc -3'
miRNA:   3'- gAGUCUGG--------------CAGCGcUUGCU-CGACGUG- -5'
17002 3' -55.5 NC_004333.2 + 41639 0.74 0.260285
Target:  5'- -gCAGAUUGUCGgGcGCGGGCUGCGg -3'
miRNA:   3'- gaGUCUGGCAGCgCuUGCUCGACGUg -5'
17002 3' -55.5 NC_004333.2 + 26472 0.67 0.613351
Target:  5'- --uGGAUCGUCGUGAaugugcgucGCGuGCcGCACg -3'
miRNA:   3'- gagUCUGGCAGCGCU---------UGCuCGaCGUG- -5'
17002 3' -55.5 NC_004333.2 + 41459 0.71 0.351585
Target:  5'- gUCGG-CCGUCGUGAuccaugGCGAGCUcgagaagucggaGCGCg -3'
miRNA:   3'- gAGUCuGGCAGCGCU------UGCUCGA------------CGUG- -5'
17002 3' -55.5 NC_004333.2 + 46313 0.69 0.504644
Target:  5'- aCUCGcGACuCGUCGaagaucgacUGAACGAGCggGCGCc -3'
miRNA:   3'- -GAGU-CUG-GCAGC---------GCUUGCUCGa-CGUG- -5'
17002 3' -55.5 NC_004333.2 + 25472 0.67 0.624457
Target:  5'- --gGGAUCGUCGCGGcgacagcCGGGUUGCGu -3'
miRNA:   3'- gagUCUGGCAGCGCUu------GCUCGACGUg -5'
17002 3' -55.5 NC_004333.2 + 13878 0.7 0.405074
Target:  5'- -cCGcGCCG-CGCGAagucggccggcACGGGCUGCGCg -3'
miRNA:   3'- gaGUcUGGCaGCGCU-----------UGCUCGACGUG- -5'
17002 3' -55.5 NC_004333.2 + 5568 0.67 0.569186
Target:  5'- -gCAGACCGUucagcucgauugUGCGGccauCGGGCaUGCGCa -3'
miRNA:   3'- gaGUCUGGCA------------GCGCUu---GCUCG-ACGUG- -5'
17002 3' -55.5 NC_004333.2 + 10501 0.69 0.483816
Target:  5'- -cCGGGCCGgcCGaCGAGCGGGUcggGCGCg -3'
miRNA:   3'- gaGUCUGGCa-GC-GCUUGCUCGa--CGUG- -5'
17002 3' -55.5 NC_004333.2 + 15755 0.68 0.536578
Target:  5'- --gAGACacUCGUcAGCGAGCUGCGCg -3'
miRNA:   3'- gagUCUGgcAGCGcUUGCUCGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.