Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17002 | 3' | -55.5 | NC_004333.2 | + | 2590 | 0.66 | 0.63557 |
Target: 5'- aUCAcGAUC-UCGCGAcCGGGCUGguCg -3' miRNA: 3'- gAGU-CUGGcAGCGCUuGCUCGACguG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 30767 | 0.71 | 0.351585 |
Target: 5'- gUCAG-CgCGUCGUGAcCGcGCUGCGCg -3' miRNA: 3'- gAGUCuG-GCAGCGCUuGCuCGACGUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 38996 | 0.71 | 0.359282 |
Target: 5'- -aCAcuGCCGUCGCGAACGAacgcaagcgcgcaGCUGCGg -3' miRNA: 3'- gaGUc-UGGCAGCGCUUGCU-------------CGACGUg -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 35834 | 0.7 | 0.433672 |
Target: 5'- ---cGACCGUCGCGAACGugaaUGCGa -3' miRNA: 3'- gaguCUGGCAGCGCUUGCucg-ACGUg -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 10984 | 0.66 | 0.645569 |
Target: 5'- aCUCGGcaccggcGCgCGUCGUGAGCGGcgugucgccgcGCUGCGg -3' miRNA: 3'- -GAGUC-------UG-GCAGCGCUUGCU-----------CGACGUg -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 45947 | 0.67 | 0.624457 |
Target: 5'- aUCGGugCGUaCGCGAACGcGGCga-ACa -3' miRNA: 3'- gAGUCugGCA-GCGCUUGC-UCGacgUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 23189 | 0.67 | 0.624457 |
Target: 5'- -aCAGGCgG-CGCGGACGcagacGUUGCGCu -3' miRNA: 3'- gaGUCUGgCaGCGCUUGCu----CGACGUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 42697 | 0.67 | 0.613351 |
Target: 5'- uUCAGGUCGUCuacgccgaaGCGAAguGGCUGCGCa -3' miRNA: 3'- gAGUCUGGCAG---------CGCUUgcUCGACGUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 27653 | 0.67 | 0.613351 |
Target: 5'- -aCAGGCCGccaGCGAGCGGcGCgGCGg -3' miRNA: 3'- gaGUCUGGCag-CGCUUGCU-CGaCGUg -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 39245 | 0.67 | 0.602262 |
Target: 5'- -aCAGcGCCGgCGCGAACGAagccGCgucGCGCa -3' miRNA: 3'- gaGUC-UGGCaGCGCUUGCU----CGa--CGUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 23042 | 0.67 | 0.591198 |
Target: 5'- aUCGGGCagGcCGCGAACGuGC-GCGCc -3' miRNA: 3'- gAGUCUGg-CaGCGCUUGCuCGaCGUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 12062 | 0.67 | 0.591198 |
Target: 5'- -gCAGGCCGUCGCcaaccuuGCGuacguGGCUGgCGCg -3' miRNA: 3'- gaGUCUGGCAGCGcu-----UGC-----UCGAC-GUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 15755 | 0.68 | 0.536578 |
Target: 5'- --gAGACacUCGUcAGCGAGCUGCGCg -3' miRNA: 3'- gagUCUGgcAGCGcUUGCUCGACGUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 10501 | 0.69 | 0.483816 |
Target: 5'- -cCGGGCCGgcCGaCGAGCGGGUcggGCGCg -3' miRNA: 3'- gaGUCUGGCa-GC-GCUUGCUCGa--CGUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 40345 | 0.69 | 0.482785 |
Target: 5'- -gCAGGCCGcgucgaucUgGCGAGCGAGCUaaacuacucguccGCGCu -3' miRNA: 3'- gaGUCUGGC--------AgCGCUUGCUCGA-------------CGUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 24428 | 0.69 | 0.473557 |
Target: 5'- ---cGACuCGUCGCGcguCGAGCUGCcCg -3' miRNA: 3'- gaguCUG-GCAGCGCuu-GCUCGACGuG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 39595 | 0.69 | 0.473557 |
Target: 5'- gCUCAGAUCGUCGCGuauCuGGCUGa-- -3' miRNA: 3'- -GAGUCUGGCAGCGCuu-GcUCGACgug -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 30123 | 0.69 | 0.463409 |
Target: 5'- gUCGGACUG-CGCaGcAGCGGGCaGCGCg -3' miRNA: 3'- gAGUCUGGCaGCG-C-UUGCUCGaCGUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 35800 | 0.7 | 0.443462 |
Target: 5'- -cCGGGCgGggCGCGGGCGGGCgcuacgGCGCc -3' miRNA: 3'- gaGUCUGgCa-GCGCUUGCUCGa-----CGUG- -5' |
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17002 | 3' | -55.5 | NC_004333.2 | + | 10617 | 0.7 | 0.443462 |
Target: 5'- -gUAGACCaaCGCGucgGCGAGCUGaCGCa -3' miRNA: 3'- gaGUCUGGcaGCGCu--UGCUCGAC-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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