miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 35899 0.67 0.490353
Target:  5'- cGCGCCGCCGgugccguguACGUUGucGACGCaaaguacUGCUg -3'
miRNA:   3'- -UGCGGCGGU---------UGUAGCu-CUGCG-------ACGAg -5'
17003 3' -56.9 NC_004333.2 + 39970 0.67 0.522893
Target:  5'- cUGCCGCgCAgcguucaaaACGUCucGACGCcGCUCa -3'
miRNA:   3'- uGCGGCG-GU---------UGUAGcuCUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 44879 0.67 0.522893
Target:  5'- cGCGCCGCCGcgcgcACAagGAGaaaggGCGUUGCc- -3'
miRNA:   3'- -UGCGGCGGU-----UGUagCUC-----UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 2890 0.67 0.522893
Target:  5'- aACGCCuCgAGCuUCGGGACGUcGUUCg -3'
miRNA:   3'- -UGCGGcGgUUGuAGCUCUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 309 0.67 0.522893
Target:  5'- -gGCUGCCAGCAguaaGAGaaGCGCgccgagccacaUGCUCa -3'
miRNA:   3'- ugCGGCGGUUGUag--CUC--UGCG-----------ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 36463 0.67 0.5123
Target:  5'- cGCGCaggaCGCCAGCAcgcCGcccGGCGCUGCgUCg -3'
miRNA:   3'- -UGCG----GCGGUUGUa--GCu--CUGCGACG-AG- -5'
17003 3' -56.9 NC_004333.2 + 33829 0.67 0.5123
Target:  5'- cAUGCCGCCGugucgcgcgucuACAUCGAaGAgGCgGCg- -3'
miRNA:   3'- -UGCGGCGGU------------UGUAGCU-CUgCGaCGag -5'
17003 3' -56.9 NC_004333.2 + 17495 0.67 0.501797
Target:  5'- cCGCCGCCGGCGgc--GGCGCgaacgGCUUc -3'
miRNA:   3'- uGCGGCGGUUGUagcuCUGCGa----CGAG- -5'
17003 3' -56.9 NC_004333.2 + 46550 0.67 0.501797
Target:  5'- uACGCCGCCGACGacgcauUCGAcccgGAUGC-GgUCg -3'
miRNA:   3'- -UGCGGCGGUUGU------AGCU----CUGCGaCgAG- -5'
17003 3' -56.9 NC_004333.2 + 6740 0.66 0.53357
Target:  5'- gAC-UCGCCcGCGUCGAGcaGCGcCUGUUCg -3'
miRNA:   3'- -UGcGGCGGuUGUAGCUC--UGC-GACGAG- -5'
17003 3' -56.9 NC_004333.2 + 12190 0.66 0.53357
Target:  5'- gGCGaCCGCgAACcaggucgCGAGcACGgUGCUCg -3'
miRNA:   3'- -UGC-GGCGgUUGua-----GCUC-UGCgACGAG- -5'
17003 3' -56.9 NC_004333.2 + 38554 0.66 0.53357
Target:  5'- cGCGCCGCCGGCAgcCGGuGCGCaaccgGC-Cg -3'
miRNA:   3'- -UGCGGCGGUUGUa-GCUcUGCGa----CGaG- -5'
17003 3' -56.9 NC_004333.2 + 28465 0.66 0.576969
Target:  5'- cACGCCaCCAGCGcCGAGcACGCgaGCa- -3'
miRNA:   3'- -UGCGGcGGUUGUaGCUC-UGCGa-CGag -5'
17003 3' -56.9 NC_004333.2 + 15900 0.66 0.575872
Target:  5'- uCGCCGCCGACccgcgccAUCcGGAaggcuuucggcCGCUGCUg -3'
miRNA:   3'- uGCGGCGGUUG-------UAGcUCU-----------GCGACGAg -5'
17003 3' -56.9 NC_004333.2 + 17079 0.66 0.572587
Target:  5'- cGCGCCGCUGACGggCcAGGCGCcgaaccugcaggcGCUCg -3'
miRNA:   3'- -UGCGGCGGUUGUa-GcUCUGCGa------------CGAG- -5'
17003 3' -56.9 NC_004333.2 + 38929 0.66 0.566029
Target:  5'- uAUGCCGCacGCggCGAGGCGCccccGUUCg -3'
miRNA:   3'- -UGCGGCGguUGuaGCUCUGCGa---CGAG- -5'
17003 3' -56.9 NC_004333.2 + 34298 0.66 0.566029
Target:  5'- gUGCCgGCCGACuUCGcgcGGCGCggcgcGCUCa -3'
miRNA:   3'- uGCGG-CGGUUGuAGCu--CUGCGa----CGAG- -5'
17003 3' -56.9 NC_004333.2 + 6631 0.66 0.566029
Target:  5'- -gGUCGUgAGCAUCGcGACGCUGaCg- -3'
miRNA:   3'- ugCGGCGgUUGUAGCuCUGCGAC-Gag -5'
17003 3' -56.9 NC_004333.2 + 36848 0.66 0.544322
Target:  5'- cGCGCCGCCuuCAUCGc-GCGCgaccagUGCa- -3'
miRNA:   3'- -UGCGGCGGuuGUAGCucUGCG------ACGag -5'
17003 3' -56.9 NC_004333.2 + 8195 0.66 0.544322
Target:  5'- cGCGCCagucaaaaacGCCAGCAccucauuagUCGGGcacucuucgaGCGCuUGCUCg -3'
miRNA:   3'- -UGCGG----------CGGUUGU---------AGCUC----------UGCG-ACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.