miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 42026 0.77 0.111138
Target:  5'- cGCGCgGCCAACGagCGGGGCG-UGCUCg -3'
miRNA:   3'- -UGCGgCGGUUGUa-GCUCUGCgACGAG- -5'
17003 3' -56.9 NC_004333.2 + 19792 0.68 0.431232
Target:  5'- gUGCCGC--GCGUUGAGugcgauGCGCUGCUg -3'
miRNA:   3'- uGCGGCGguUGUAGCUC------UGCGACGAg -5'
17003 3' -56.9 NC_004333.2 + 3219 0.68 0.460791
Target:  5'- cGCGCCGCCcGCccCGAuGACGCcggGCa- -3'
miRNA:   3'- -UGCGGCGGuUGuaGCU-CUGCGa--CGag -5'
17003 3' -56.9 NC_004333.2 + 3391 0.66 0.592358
Target:  5'- gGCGUCGCCGuCGUCGcgggagcuucggugaAGAacaGCUGCg- -3'
miRNA:   3'- -UGCGGCGGUuGUAGC---------------UCUg--CGACGag -5'
17003 3' -56.9 NC_004333.2 + 41418 0.75 0.17368
Target:  5'- cACG-CGCaCAugAUCGAacaGGCGCUGCUCg -3'
miRNA:   3'- -UGCgGCG-GUugUAGCU---CUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 38988 0.71 0.286901
Target:  5'- -gGCCGaUCGACccgaacuggcauGUCGAGGCGCUGCa- -3'
miRNA:   3'- ugCGGC-GGUUG------------UAGCUCUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 38402 0.71 0.294237
Target:  5'- gACGCCgGCCAcggucaagacgGCgAUCGAGACGCUuGC-Cg -3'
miRNA:   3'- -UGCGG-CGGU-----------UG-UAGCUCUGCGA-CGaG- -5'
17003 3' -56.9 NC_004333.2 + 46612 0.71 0.309346
Target:  5'- gACGCC-CCGAUAUCGGGGCGUUaaacuuuaGCUa -3'
miRNA:   3'- -UGCGGcGGUUGUAGCUCUGCGA--------CGAg -5'
17003 3' -56.9 NC_004333.2 + 44837 0.7 0.333105
Target:  5'- gACGaCGCUGGCcgCGAGACGCUGaagaagaUCg -3'
miRNA:   3'- -UGCgGCGGUUGuaGCUCUGCGACg------AG- -5'
17003 3' -56.9 NC_004333.2 + 11814 0.69 0.412153
Target:  5'- gACGCgGCCAuCAgcgCGAcGGCGC-GCUCc -3'
miRNA:   3'- -UGCGgCGGUuGUa--GCU-CUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 18496 0.7 0.358175
Target:  5'- cCGuuGCCGGCAcgcCGAcgGACGCUGCa- -3'
miRNA:   3'- uGCggCGGUUGUa--GCU--CUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 28147 0.71 0.317119
Target:  5'- cGCGCCGCCGAgGUUGAcagcgauACGCauccggUGCUCg -3'
miRNA:   3'- -UGCGGCGGUUgUAGCUc------UGCG------ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 43076 0.76 0.147199
Target:  5'- gACGCCGC--ACAUCGAGACGCga-UCa -3'
miRNA:   3'- -UGCGGCGguUGUAGCUCUGCGacgAG- -5'
17003 3' -56.9 NC_004333.2 + 38159 0.69 0.375608
Target:  5'- -gGCCGCCGAUcUUGGcACGCcGCUCg -3'
miRNA:   3'- ugCGGCGGUUGuAGCUcUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 31105 0.75 0.164412
Target:  5'- gGC-CCGUCAGCGgcgCGAGuuGCUGCUCg -3'
miRNA:   3'- -UGcGGCGGUUGUa--GCUCugCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 10674 0.71 0.317119
Target:  5'- cGCGCCgGCCGgugcacgcuauGCAcUCGGuucGACGCUGUUCg -3'
miRNA:   3'- -UGCGG-CGGU-----------UGU-AGCU---CUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 29979 0.69 0.379163
Target:  5'- cGCGCUGCCAccgGCGcCGAGcgcgagcaccaugcgGCGCcGCUCg -3'
miRNA:   3'- -UGCGGCGGU---UGUaGCUC---------------UGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 15934 0.68 0.439984
Target:  5'- uCGCCGCCAcaAUCGGGgcaagucACGUUGCg- -3'
miRNA:   3'- uGCGGCGGUugUAGCUC-------UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 20740 0.75 0.168989
Target:  5'- cGCGCUGCCgGACAUCGccGACGCgGCUg -3'
miRNA:   3'- -UGCGGCGG-UUGUAGCu-CUGCGaCGAg -5'
17003 3' -56.9 NC_004333.2 + 32527 0.71 0.294237
Target:  5'- aGCGuUUGCCGACGUCGcgcGGCGC-GCUCg -3'
miRNA:   3'- -UGC-GGCGGUUGUAGCu--CUGCGaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.