miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 25199 0.67 0.490353
Target:  5'- uCGCUGCgcgacuCGACGUCGAcgcccgcGACGCUGC-Cg -3'
miRNA:   3'- uGCGGCG------GUUGUAGCU-------CUGCGACGaG- -5'
17003 3' -56.9 NC_004333.2 + 3219 0.68 0.460791
Target:  5'- cGCGCCGCCcGCccCGAuGACGCcggGCa- -3'
miRNA:   3'- -UGCGGCGGuUGuaGCU-CUGCGa--CGag -5'
17003 3' -56.9 NC_004333.2 + 28147 0.71 0.317119
Target:  5'- cGCGCCGCCGAgGUUGAcagcgauACGCauccggUGCUCg -3'
miRNA:   3'- -UGCGGCGGUUgUAGCUc------UGCG------ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 20740 0.75 0.168989
Target:  5'- cGCGCUGCCgGACAUCGccGACGCgGCUg -3'
miRNA:   3'- -UGCGGCGG-UUGUAGCu-CUGCGaCGAg -5'
17003 3' -56.9 NC_004333.2 + 17368 0.66 0.584654
Target:  5'- -aGUCGCUgugggagGACGUCGAGcagcgcaucgaGCUGCUCg -3'
miRNA:   3'- ugCGGCGG-------UUGUAGCUCug---------CGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 37506 0.66 0.537862
Target:  5'- -gGCCGCCGgccacggccACGUgaagaucagucguucCGGuGCGCUGCUCg -3'
miRNA:   3'- ugCGGCGGU---------UGUA---------------GCUcUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 19792 0.68 0.431232
Target:  5'- gUGCCGC--GCGUUGAGugcgauGCGCUGCUg -3'
miRNA:   3'- uGCGGCGguUGUAGCUC------UGCGACGAg -5'
17003 3' -56.9 NC_004333.2 + 31105 0.75 0.164412
Target:  5'- gGC-CCGUCAGCGgcgCGAGuuGCUGCUCg -3'
miRNA:   3'- -UGcGGCGGUUGUa--GCUCugCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 6688 0.67 0.522893
Target:  5'- cCGCCGCUucACGUgCGGGGCGCauugGCg- -3'
miRNA:   3'- uGCGGCGGu-UGUA-GCUCUGCGa---CGag -5'
17003 3' -56.9 NC_004333.2 + 43076 0.76 0.147199
Target:  5'- gACGCCGC--ACAUCGAGACGCga-UCa -3'
miRNA:   3'- -UGCGGCGguUGUAGCUCUGCGacgAG- -5'
17003 3' -56.9 NC_004333.2 + 15934 0.68 0.439984
Target:  5'- uCGCCGCCAcaAUCGGGgcaagucACGUUGCg- -3'
miRNA:   3'- uGCGGCGGUugUAGCUC-------UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 29409 0.67 0.491389
Target:  5'- aACGCCGuUCGcCGUCGcGGCGCUGgCUg -3'
miRNA:   3'- -UGCGGC-GGUuGUAGCuCUGCGAC-GAg -5'
17003 3' -56.9 NC_004333.2 + 38159 0.69 0.375608
Target:  5'- -gGCCGCCGAUcUUGGcACGCcGCUCg -3'
miRNA:   3'- ugCGGCGGUUGuAGCUcUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 44837 0.7 0.333105
Target:  5'- gACGaCGCUGGCcgCGAGACGCUGaagaagaUCg -3'
miRNA:   3'- -UGCgGCGGUUGuaGCUCUGCGACg------AG- -5'
17003 3' -56.9 NC_004333.2 + 38402 0.71 0.294237
Target:  5'- gACGCCgGCCAcggucaagacgGCgAUCGAGACGCUuGC-Cg -3'
miRNA:   3'- -UGCGG-CGGU-----------UG-UAGCUCUGCGA-CGaG- -5'
17003 3' -56.9 NC_004333.2 + 41418 0.75 0.17368
Target:  5'- cACG-CGCaCAugAUCGAacaGGCGCUGCUCg -3'
miRNA:   3'- -UGCgGCG-GUugUAGCU---CUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 17477 0.66 0.587953
Target:  5'- -gGCCGCC-GCGcUC---ACGCUGCUCg -3'
miRNA:   3'- ugCGGCGGuUGU-AGcucUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 5151 0.66 0.587953
Target:  5'- -aGCCGCCcguguUGUCGAGcaGCGCaGCUUg -3'
miRNA:   3'- ugCGGCGGuu---GUAGCUC--UGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 16856 0.66 0.555145
Target:  5'- uCGCgGCCAagGCgAUCGAcgGGCGaCUGUUCg -3'
miRNA:   3'- uGCGgCGGU--UG-UAGCU--CUGC-GACGAG- -5'
17003 3' -56.9 NC_004333.2 + 45239 0.66 0.544322
Target:  5'- gUGCCGaccuguCCGGCAUCGAagcgcgcguGGCGCcuugGCUCg -3'
miRNA:   3'- uGCGGC------GGUUGUAGCU---------CUGCGa---CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.