miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 46612 0.71 0.309346
Target:  5'- gACGCC-CCGAUAUCGGGGCGUUaaacuuuaGCUa -3'
miRNA:   3'- -UGCGGcGGUUGUAGCUCUGCGA--------CGAg -5'
17003 3' -56.9 NC_004333.2 + 16851 0.71 0.309346
Target:  5'- -aGCUgGCCGGCAUUGcGGGCGCcgUGCUCg -3'
miRNA:   3'- ugCGG-CGGUUGUAGC-UCUGCG--ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 22238 0.71 0.309346
Target:  5'- -gGCCGCCGGCAUCGAcgccGCGCgcaauaGCUa -3'
miRNA:   3'- ugCGGCGGUUGUAGCUc---UGCGa-----CGAg -5'
17003 3' -56.9 NC_004333.2 + 19406 0.71 0.309346
Target:  5'- cGCGCCGCCGcgacccGCG-CGGucGACGCggcGCUCg -3'
miRNA:   3'- -UGCGGCGGU------UGUaGCU--CUGCGa--CGAG- -5'
17003 3' -56.9 NC_004333.2 + 28147 0.71 0.317119
Target:  5'- cGCGCCGCCGAgGUUGAcagcgauACGCauccggUGCUCg -3'
miRNA:   3'- -UGCGGCGGUUgUAGCUc------UGCG------ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 10674 0.71 0.317119
Target:  5'- cGCGCCgGCCGgugcacgcuauGCAcUCGGuucGACGCUGUUCg -3'
miRNA:   3'- -UGCGG-CGGU-----------UGU-AGCU---CUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 23665 0.7 0.333105
Target:  5'- aACGCCGCCGGCcUCc-GGCgGCUGCaUCg -3'
miRNA:   3'- -UGCGGCGGUUGuAGcuCUG-CGACG-AG- -5'
17003 3' -56.9 NC_004333.2 + 44837 0.7 0.333105
Target:  5'- gACGaCGCUGGCcgCGAGACGCUGaagaagaUCg -3'
miRNA:   3'- -UGCgGCGGUUGuaGCUCUGCGACg------AG- -5'
17003 3' -56.9 NC_004333.2 + 1236 0.7 0.349673
Target:  5'- cGCGCCGCCuuggcuGCGcgCGAGGCuucGCggcGCUCg -3'
miRNA:   3'- -UGCGGCGGu-----UGUa-GCUCUG---CGa--CGAG- -5'
17003 3' -56.9 NC_004333.2 + 1568 0.7 0.358175
Target:  5'- aACGCC-CCGAUAUCGGGGCGUcaaguaCUCg -3'
miRNA:   3'- -UGCGGcGGUUGUAGCUCUGCGac----GAG- -5'
17003 3' -56.9 NC_004333.2 + 18496 0.7 0.358175
Target:  5'- cCGuuGCCGGCAcgcCGAcgGACGCUGCa- -3'
miRNA:   3'- uGCggCGGUUGUa--GCU--CUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 8925 0.69 0.365949
Target:  5'- uGCGCCuGCCGGCcgcucggggugcgGUCGAGcauugcACGCaGCUCg -3'
miRNA:   3'- -UGCGG-CGGUUG-------------UAGCUC------UGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 22989 0.69 0.375608
Target:  5'- -aGUCGCgCAGCGaguUCGAGACGCgGCg- -3'
miRNA:   3'- ugCGGCG-GUUGU---AGCUCUGCGaCGag -5'
17003 3' -56.9 NC_004333.2 + 38159 0.69 0.375608
Target:  5'- -gGCCGCCGAUcUUGGcACGCcGCUCg -3'
miRNA:   3'- ugCGGCGGUUGuAGCUcUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 29979 0.69 0.379163
Target:  5'- cGCGCUGCCAccgGCGcCGAGcgcgagcaccaugcgGCGCcGCUCg -3'
miRNA:   3'- -UGCGGCGGU---UGUaGCUC---------------UGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 21568 0.69 0.384537
Target:  5'- aACGCCGCCAGCuuuGUCGuGaACGCgccgaccacGUUCa -3'
miRNA:   3'- -UGCGGCGGUUG---UAGCuC-UGCGa--------CGAG- -5'
17003 3' -56.9 NC_004333.2 + 35041 0.69 0.384537
Target:  5'- uCGuUCGCCGGCAUCagcauGACGCaGCUCg -3'
miRNA:   3'- uGC-GGCGGUUGUAGcu---CUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 32905 0.69 0.389962
Target:  5'- cGCGCCGCCGcagcacggcaaauCGUCGcuauuucGCGCUGCUUg -3'
miRNA:   3'- -UGCGGCGGUu------------GUAGCuc-----UGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 31318 0.69 0.392693
Target:  5'- -aGUCGCCcgucgaucgccuuGGCcgCGAcGCGCUGCUCg -3'
miRNA:   3'- ugCGGCGG-------------UUGuaGCUcUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 24049 0.69 0.412153
Target:  5'- -gGCCGCgAACAUUGc-GCGCUGCg- -3'
miRNA:   3'- ugCGGCGgUUGUAGCucUGCGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.