miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 36848 0.66 0.544322
Target:  5'- cGCGCCGCCuuCAUCGc-GCGCgaccagUGCa- -3'
miRNA:   3'- -UGCGGCGGuuGUAGCucUGCG------ACGag -5'
17003 3' -56.9 NC_004333.2 + 8195 0.66 0.544322
Target:  5'- cGCGCCagucaaaaacGCCAGCAccucauuagUCGGGcacucuucgaGCGCuUGCUCg -3'
miRNA:   3'- -UGCGG----------CGGUUGU---------AGCUC----------UGCG-ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 37506 0.66 0.537862
Target:  5'- -gGCCGCCGgccacggccACGUgaagaucagucguucCGGuGCGCUGCUCg -3'
miRNA:   3'- ugCGGCGGU---------UGUA---------------GCUcUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 12190 0.66 0.53357
Target:  5'- gGCGaCCGCgAACcaggucgCGAGcACGgUGCUCg -3'
miRNA:   3'- -UGC-GGCGgUUGua-----GCUC-UGCgACGAG- -5'
17003 3' -56.9 NC_004333.2 + 38554 0.66 0.53357
Target:  5'- cGCGCCGCCGGCAgcCGGuGCGCaaccgGC-Cg -3'
miRNA:   3'- -UGCGGCGGUUGUa-GCUcUGCGa----CGaG- -5'
17003 3' -56.9 NC_004333.2 + 6740 0.66 0.53357
Target:  5'- gAC-UCGCCcGCGUCGAGcaGCGcCUGUUCg -3'
miRNA:   3'- -UGcGGCGGuUGUAGCUC--UGC-GACGAG- -5'
17003 3' -56.9 NC_004333.2 + 309 0.67 0.522893
Target:  5'- -gGCUGCCAGCAguaaGAGaaGCGCgccgagccacaUGCUCa -3'
miRNA:   3'- ugCGGCGGUUGUag--CUC--UGCG-----------ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 6688 0.67 0.522893
Target:  5'- cCGCCGCUucACGUgCGGGGCGCauugGCg- -3'
miRNA:   3'- uGCGGCGGu-UGUA-GCUCUGCGa---CGag -5'
17003 3' -56.9 NC_004333.2 + 39970 0.67 0.522893
Target:  5'- cUGCCGCgCAgcguucaaaACGUCucGACGCcGCUCa -3'
miRNA:   3'- uGCGGCG-GU---------UGUAGcuCUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 44879 0.67 0.522893
Target:  5'- cGCGCCGCCGcgcgcACAagGAGaaaggGCGUUGCc- -3'
miRNA:   3'- -UGCGGCGGU-----UGUagCUC-----UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 2890 0.67 0.522893
Target:  5'- aACGCCuCgAGCuUCGGGACGUcGUUCg -3'
miRNA:   3'- -UGCGGcGgUUGuAGCUCUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 37456 0.67 0.5123
Target:  5'- aACGgCGCCGACAUUccGGCGCUcGC-Ca -3'
miRNA:   3'- -UGCgGCGGUUGUAGcuCUGCGA-CGaG- -5'
17003 3' -56.9 NC_004333.2 + 33829 0.67 0.5123
Target:  5'- cAUGCCGCCGugucgcgcgucuACAUCGAaGAgGCgGCg- -3'
miRNA:   3'- -UGCGGCGGU------------UGUAGCU-CUgCGaCGag -5'
17003 3' -56.9 NC_004333.2 + 36463 0.67 0.5123
Target:  5'- cGCGCaggaCGCCAGCAcgcCGcccGGCGCUGCgUCg -3'
miRNA:   3'- -UGCG----GCGGUUGUa--GCu--CUGCGACG-AG- -5'
17003 3' -56.9 NC_004333.2 + 17495 0.67 0.501797
Target:  5'- cCGCCGCCGGCGgc--GGCGCgaacgGCUUc -3'
miRNA:   3'- uGCGGCGGUUGUagcuCUGCGa----CGAG- -5'
17003 3' -56.9 NC_004333.2 + 46550 0.67 0.501797
Target:  5'- uACGCCGCCGACGacgcauUCGAcccgGAUGC-GgUCg -3'
miRNA:   3'- -UGCGGCGGUUGU------AGCU----CUGCGaCgAG- -5'
17003 3' -56.9 NC_004333.2 + 11486 0.67 0.500751
Target:  5'- gACGUuuuccugcaccuuCGCCuuCAUcaCGAGGCGCUGCg- -3'
miRNA:   3'- -UGCG-------------GCGGuuGUA--GCUCUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 29409 0.67 0.491389
Target:  5'- aACGCCGuUCGcCGUCGcGGCGCUGgCUg -3'
miRNA:   3'- -UGCGGC-GGUuGUAGCuCUGCGAC-GAg -5'
17003 3' -56.9 NC_004333.2 + 25199 0.67 0.490353
Target:  5'- uCGCUGCgcgacuCGACGUCGAcgcccgcGACGCUGC-Cg -3'
miRNA:   3'- uGCGGCG------GUUGUAGCU-------CUGCGACGaG- -5'
17003 3' -56.9 NC_004333.2 + 35899 0.67 0.490353
Target:  5'- cGCGCCGCCGgugccguguACGUUGucGACGCaaaguacUGCUg -3'
miRNA:   3'- -UGCGGCGGU---------UGUAGCu-CUGCG-------ACGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.