miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 3149 0.67 0.481082
Target:  5'- cGCGCCGCCAGCgccacgcgcgGUCGAGcggccggacaGCGC-GC-Cg -3'
miRNA:   3'- -UGCGGCGGUUG----------UAGCUC----------UGCGaCGaG- -5'
17003 3' -56.9 NC_004333.2 + 3760 0.67 0.481082
Target:  5'- gUGCCGUaCAGCGUCGAcGugGC-GUUCu -3'
miRNA:   3'- uGCGGCG-GUUGUAGCU-CugCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 39888 0.67 0.481082
Target:  5'- cGCGCCGCCuaccuACAUCaagGAGAaaCUGCa- -3'
miRNA:   3'- -UGCGGCGGu----UGUAG---CUCUgcGACGag -5'
17003 3' -56.9 NC_004333.2 + 32840 0.68 0.470881
Target:  5'- uGCGCCGagaucgaCAAguuCAUCGAcGAC-CUGCUCg -3'
miRNA:   3'- -UGCGGCg------GUU---GUAGCU-CUGcGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 13521 0.68 0.460791
Target:  5'- uCGCCGuCCGACGugcUCGcGGCGUUGC-Cg -3'
miRNA:   3'- uGCGGC-GGUUGU---AGCuCUGCGACGaG- -5'
17003 3' -56.9 NC_004333.2 + 4314 0.68 0.460791
Target:  5'- gUGCCGCgAGCAcCGGG-UGCUGCg- -3'
miRNA:   3'- uGCGGCGgUUGUaGCUCuGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 3219 0.68 0.460791
Target:  5'- cGCGCCGCCcGCccCGAuGACGCcggGCa- -3'
miRNA:   3'- -UGCGGCGGuUGuaGCU-CUGCGa--CGag -5'
17003 3' -56.9 NC_004333.2 + 44002 0.68 0.460791
Target:  5'- cACGCCGCugCAGCA-CGAGcgcggcGCGCUGUa- -3'
miRNA:   3'- -UGCGGCG--GUUGUaGCUC------UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 10388 0.68 0.450817
Target:  5'- cGCGCCGCUucGCAUCcuuGGC-CUGCUUg -3'
miRNA:   3'- -UGCGGCGGu-UGUAGcu-CUGcGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 24957 0.68 0.450817
Target:  5'- uCGCCGCCGugAUCaAGACgGCgGCg- -3'
miRNA:   3'- uGCGGCGGUugUAGcUCUG-CGaCGag -5'
17003 3' -56.9 NC_004333.2 + 29654 0.68 0.440963
Target:  5'- uUGCCGCCGGCugCGaAGGcCGCUGCa- -3'
miRNA:   3'- uGCGGCGGUUGuaGC-UCU-GCGACGag -5'
17003 3' -56.9 NC_004333.2 + 5480 0.68 0.439984
Target:  5'- aACGCCGCCcgcucgucggccGGCGUgGAGacgaucgGCGCUGUUg -3'
miRNA:   3'- -UGCGGCGG------------UUGUAgCUC-------UGCGACGAg -5'
17003 3' -56.9 NC_004333.2 + 15934 0.68 0.439984
Target:  5'- uCGCCGCCAcaAUCGGGgcaagucACGUUGCg- -3'
miRNA:   3'- uGCGGCGGUugUAGCUC-------UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 43538 0.68 0.431232
Target:  5'- cCGUCGCCAugAUCGcGAUgGC-GCUCa -3'
miRNA:   3'- uGCGGCGGUugUAGCuCUG-CGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 15649 0.68 0.431232
Target:  5'- cGCGCCGCgCGACGUCGGcaaACGCUuccgGgUCa -3'
miRNA:   3'- -UGCGGCG-GUUGUAGCUc--UGCGA----CgAG- -5'
17003 3' -56.9 NC_004333.2 + 19792 0.68 0.431232
Target:  5'- gUGCCGC--GCGUUGAGugcgauGCGCUGCUg -3'
miRNA:   3'- uGCGGCGguUGUAGCUC------UGCGACGAg -5'
17003 3' -56.9 NC_004333.2 + 11814 0.69 0.412153
Target:  5'- gACGCgGCCAuCAgcgCGAcGGCGC-GCUCc -3'
miRNA:   3'- -UGCGgCGGUuGUa--GCU-CUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 25258 0.69 0.412153
Target:  5'- uACGCUGCaCAAC-UCGAGcggcagcaccGCGCuucUGCUCg -3'
miRNA:   3'- -UGCGGCG-GUUGuAGCUC----------UGCG---ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 24049 0.69 0.412153
Target:  5'- -gGCCGCgAACAUUGc-GCGCUGCg- -3'
miRNA:   3'- ugCGGCGgUUGUAGCucUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 10497 0.69 0.412153
Target:  5'- cGCGCCggGCCGGCcgacgagcggGUCGGGcGCGC-GCUCg -3'
miRNA:   3'- -UGCGG--CGGUUG----------UAGCUC-UGCGaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.