miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 19406 0.71 0.309346
Target:  5'- cGCGCCGCCGcgacccGCG-CGGucGACGCggcGCUCg -3'
miRNA:   3'- -UGCGGCGGU------UGUaGCU--CUGCGa--CGAG- -5'
17003 3' -56.9 NC_004333.2 + 19792 0.68 0.431232
Target:  5'- gUGCCGC--GCGUUGAGugcgauGCGCUGCUg -3'
miRNA:   3'- uGCGGCGguUGUAGCUC------UGCGACGAg -5'
17003 3' -56.9 NC_004333.2 + 20509 0.66 0.587953
Target:  5'- cCGCUGCCGGCcgcCGccGCGCcGCUCg -3'
miRNA:   3'- uGCGGCGGUUGua-GCucUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 20557 0.66 0.576969
Target:  5'- cGCGCCGCUGAuCGUCGGcGCGUcgGgUCg -3'
miRNA:   3'- -UGCGGCGGUU-GUAGCUcUGCGa-CgAG- -5'
17003 3' -56.9 NC_004333.2 + 20584 0.72 0.242073
Target:  5'- gGCGCCGCgcuauuCGACGUCGGGcaucaccuuuacuuCGCUGUUCa -3'
miRNA:   3'- -UGCGGCG------GUUGUAGCUCu-------------GCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 20740 0.75 0.168989
Target:  5'- cGCGCUGCCgGACAUCGccGACGCgGCUg -3'
miRNA:   3'- -UGCGGCGG-UUGUAGCu-CUGCGaCGAg -5'
17003 3' -56.9 NC_004333.2 + 21568 0.69 0.384537
Target:  5'- aACGCCGCCAGCuuuGUCGuGaACGCgccgaccacGUUCa -3'
miRNA:   3'- -UGCGGCGGUUG---UAGCuC-UGCGa--------CGAG- -5'
17003 3' -56.9 NC_004333.2 + 22238 0.71 0.309346
Target:  5'- -gGCCGCCGGCAUCGAcgccGCGCgcaauaGCUa -3'
miRNA:   3'- ugCGGCGGUUGUAGCUc---UGCGa-----CGAg -5'
17003 3' -56.9 NC_004333.2 + 22765 0.75 0.164412
Target:  5'- cCGCCGCCGGCA-CGcugcAGGCGC-GCUCg -3'
miRNA:   3'- uGCGGCGGUUGUaGC----UCUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 22989 0.69 0.375608
Target:  5'- -aGUCGCgCAGCGaguUCGAGACGCgGCg- -3'
miRNA:   3'- ugCGGCG-GUUGU---AGCUCUGCGaCGag -5'
17003 3' -56.9 NC_004333.2 + 23665 0.7 0.333105
Target:  5'- aACGCCGCCGGCcUCc-GGCgGCUGCaUCg -3'
miRNA:   3'- -UGCGGCGGUUGuAGcuCUG-CGACG-AG- -5'
17003 3' -56.9 NC_004333.2 + 24049 0.69 0.412153
Target:  5'- -gGCCGCgAACAUUGc-GCGCUGCg- -3'
miRNA:   3'- ugCGGCGgUUGUAGCucUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 24957 0.68 0.450817
Target:  5'- uCGCCGCCGugAUCaAGACgGCgGCg- -3'
miRNA:   3'- uGCGGCGGUugUAGcUCUG-CGaCGag -5'
17003 3' -56.9 NC_004333.2 + 25199 0.67 0.490353
Target:  5'- uCGCUGCgcgacuCGACGUCGAcgcccgcGACGCUGC-Cg -3'
miRNA:   3'- uGCGGCG------GUUGUAGCU-------CUGCGACGaG- -5'
17003 3' -56.9 NC_004333.2 + 25258 0.69 0.412153
Target:  5'- uACGCUGCaCAAC-UCGAGcggcagcaccGCGCuucUGCUCg -3'
miRNA:   3'- -UGCGGCG-GUUGuAGCUC----------UGCG---ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 25537 0.66 0.592358
Target:  5'- cGCGCCGCUcgaggucagcgggucGACAUUGGcGAUcaGCUGCg- -3'
miRNA:   3'- -UGCGGCGG---------------UUGUAGCU-CUG--CGACGag -5'
17003 3' -56.9 NC_004333.2 + 28147 0.71 0.317119
Target:  5'- cGCGCCGCCGAgGUUGAcagcgauACGCauccggUGCUCg -3'
miRNA:   3'- -UGCGGCGGUUgUAGCUc------UGCG------ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 28465 0.66 0.576969
Target:  5'- cACGCCaCCAGCGcCGAGcACGCgaGCa- -3'
miRNA:   3'- -UGCGGcGGUUGUaGCUC-UGCGa-CGag -5'
17003 3' -56.9 NC_004333.2 + 29409 0.67 0.491389
Target:  5'- aACGCCGuUCGcCGUCGcGGCGCUGgCUg -3'
miRNA:   3'- -UGCGGC-GGUuGUAGCuCUGCGAC-GAg -5'
17003 3' -56.9 NC_004333.2 + 29654 0.68 0.440963
Target:  5'- uUGCCGCCGGCugCGaAGGcCGCUGCa- -3'
miRNA:   3'- uGCGGCGGUUGuaGC-UCU-GCGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.