miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 9658 0.73 0.226679
Target:  5'- cGCGUCGCacaGAUcgacaaagaacguGUCGAGGCGCUGCg- -3'
miRNA:   3'- -UGCGGCGg--UUG-------------UAGCUCUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 10388 0.68 0.450817
Target:  5'- cGCGCCGCUucGCAUCcuuGGC-CUGCUUg -3'
miRNA:   3'- -UGCGGCGGu-UGUAGcu-CUGcGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 10497 0.69 0.412153
Target:  5'- cGCGCCggGCCGGCcgacgagcggGUCGGGcGCGC-GCUCg -3'
miRNA:   3'- -UGCGG--CGGUUG----------UAGCUC-UGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 10674 0.71 0.317119
Target:  5'- cGCGCCgGCCGgugcacgcuauGCAcUCGGuucGACGCUGUUCg -3'
miRNA:   3'- -UGCGG-CGGU-----------UGU-AGCU---CUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 11486 0.67 0.500751
Target:  5'- gACGUuuuccugcaccuuCGCCuuCAUcaCGAGGCGCUGCg- -3'
miRNA:   3'- -UGCG-------------GCGGuuGUA--GCUCUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 11814 0.69 0.412153
Target:  5'- gACGCgGCCAuCAgcgCGAcGGCGC-GCUCc -3'
miRNA:   3'- -UGCGgCGGUuGUa--GCU-CUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 12190 0.66 0.53357
Target:  5'- gGCGaCCGCgAACcaggucgCGAGcACGgUGCUCg -3'
miRNA:   3'- -UGC-GGCGgUUGua-----GCUC-UGCgACGAG- -5'
17003 3' -56.9 NC_004333.2 + 13521 0.68 0.460791
Target:  5'- uCGCCGuCCGACGugcUCGcGGCGUUGC-Cg -3'
miRNA:   3'- uGCGGC-GGUUGU---AGCuCUGCGACGaG- -5'
17003 3' -56.9 NC_004333.2 + 15291 0.66 0.566029
Target:  5'- gGCGCgGUCAGCAUCagcaccGGGCGCUuGCcgUCg -3'
miRNA:   3'- -UGCGgCGGUUGUAGc-----UCUGCGA-CG--AG- -5'
17003 3' -56.9 NC_004333.2 + 15649 0.68 0.431232
Target:  5'- cGCGCCGCgCGACGUCGGcaaACGCUuccgGgUCa -3'
miRNA:   3'- -UGCGGCG-GUUGUAGCUc--UGCGA----CgAG- -5'
17003 3' -56.9 NC_004333.2 + 15900 0.66 0.575872
Target:  5'- uCGCCGCCGACccgcgccAUCcGGAaggcuuucggcCGCUGCUg -3'
miRNA:   3'- uGCGGCGGUUG-------UAGcUCU-----------GCGACGAg -5'
17003 3' -56.9 NC_004333.2 + 15934 0.68 0.439984
Target:  5'- uCGCCGCCAcaAUCGGGgcaagucACGUUGCg- -3'
miRNA:   3'- uGCGGCGGUugUAGCUC-------UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 16851 0.71 0.309346
Target:  5'- -aGCUgGCCGGCAUUGcGGGCGCcgUGCUCg -3'
miRNA:   3'- ugCGG-CGGUUGUAGC-UCUGCG--ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 16856 0.66 0.555145
Target:  5'- uCGCgGCCAagGCgAUCGAcgGGCGaCUGUUCg -3'
miRNA:   3'- uGCGgCGGU--UG-UAGCU--CUGC-GACGAG- -5'
17003 3' -56.9 NC_004333.2 + 17010 0.66 0.587953
Target:  5'- uACGCCGUCGccGCGcucgacUCGuGcACGCUGCa- -3'
miRNA:   3'- -UGCGGCGGU--UGU------AGCuC-UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 17079 0.66 0.572587
Target:  5'- cGCGCCGCUGACGggCcAGGCGCcgaaccugcaggcGCUCg -3'
miRNA:   3'- -UGCGGCGGUUGUa-GcUCUGCGa------------CGAG- -5'
17003 3' -56.9 NC_004333.2 + 17368 0.66 0.584654
Target:  5'- -aGUCGCUgugggagGACGUCGAGcagcgcaucgaGCUGCUCg -3'
miRNA:   3'- ugCGGCGG-------UUGUAGCUCug---------CGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 17477 0.66 0.587953
Target:  5'- -gGCCGCC-GCGcUC---ACGCUGCUCg -3'
miRNA:   3'- ugCGGCGGuUGU-AGcucUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 17495 0.67 0.501797
Target:  5'- cCGCCGCCGGCGgc--GGCGCgaacgGCUUc -3'
miRNA:   3'- uGCGGCGGUUGUagcuCUGCGa----CGAG- -5'
17003 3' -56.9 NC_004333.2 + 18496 0.7 0.358175
Target:  5'- cCGuuGCCGGCAcgcCGAcgGACGCUGCa- -3'
miRNA:   3'- uGCggCGGUUGUa--GCU--CUGCGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.