miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 38402 0.71 0.294237
Target:  5'- gACGCCgGCCAcggucaagacgGCgAUCGAGACGCUuGC-Cg -3'
miRNA:   3'- -UGCGG-CGGU-----------UG-UAGCUCUGCGA-CGaG- -5'
17003 3' -56.9 NC_004333.2 + 38159 0.69 0.375608
Target:  5'- -gGCCGCCGAUcUUGGcACGCcGCUCg -3'
miRNA:   3'- ugCGGCGGUUGuAGCUcUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 37506 0.66 0.537862
Target:  5'- -gGCCGCCGgccacggccACGUgaagaucagucguucCGGuGCGCUGCUCg -3'
miRNA:   3'- ugCGGCGGU---------UGUA---------------GCUcUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 37456 0.67 0.5123
Target:  5'- aACGgCGCCGACAUUccGGCGCUcGC-Ca -3'
miRNA:   3'- -UGCgGCGGUUGUAGcuCUGCGA-CGaG- -5'
17003 3' -56.9 NC_004333.2 + 36848 0.66 0.544322
Target:  5'- cGCGCCGCCuuCAUCGc-GCGCgaccagUGCa- -3'
miRNA:   3'- -UGCGGCGGuuGUAGCucUGCG------ACGag -5'
17003 3' -56.9 NC_004333.2 + 36463 0.67 0.5123
Target:  5'- cGCGCaggaCGCCAGCAcgcCGcccGGCGCUGCgUCg -3'
miRNA:   3'- -UGCG----GCGGUUGUa--GCu--CUGCGACG-AG- -5'
17003 3' -56.9 NC_004333.2 + 36268 0.66 0.576969
Target:  5'- cGCGCCGCUGcGCAUgcCGGGcCGCgacgacaaggUGCUCg -3'
miRNA:   3'- -UGCGGCGGU-UGUA--GCUCuGCG----------ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 35899 0.67 0.490353
Target:  5'- cGCGCCGCCGgugccguguACGUUGucGACGCaaaguacUGCUg -3'
miRNA:   3'- -UGCGGCGGU---------UGUAGCu-CUGCG-------ACGAg -5'
17003 3' -56.9 NC_004333.2 + 35041 0.69 0.384537
Target:  5'- uCGuUCGCCGGCAUCagcauGACGCaGCUCg -3'
miRNA:   3'- uGC-GGCGGUUGUAGcu---CUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 34298 0.66 0.566029
Target:  5'- gUGCCgGCCGACuUCGcgcGGCGCggcgcGCUCa -3'
miRNA:   3'- uGCGG-CGGUUGuAGCu--CUGCGa----CGAG- -5'
17003 3' -56.9 NC_004333.2 + 33829 0.67 0.5123
Target:  5'- cAUGCCGCCGugucgcgcgucuACAUCGAaGAgGCgGCg- -3'
miRNA:   3'- -UGCGGCGGU------------UGUAGCU-CUgCGaCGag -5'
17003 3' -56.9 NC_004333.2 + 32905 0.69 0.389962
Target:  5'- cGCGCCGCCGcagcacggcaaauCGUCGcuauuucGCGCUGCUUg -3'
miRNA:   3'- -UGCGGCGGUu------------GUAGCuc-----UGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 32840 0.68 0.470881
Target:  5'- uGCGCCGagaucgaCAAguuCAUCGAcGAC-CUGCUCg -3'
miRNA:   3'- -UGCGGCg------GUU---GUAGCU-CUGcGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 32527 0.71 0.294237
Target:  5'- aGCGuUUGCCGACGUCGcgcGGCGC-GCUCg -3'
miRNA:   3'- -UGC-GGCGGUUGUAGCu--CUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 31318 0.69 0.392693
Target:  5'- -aGUCGCCcgucgaucgccuuGGCcgCGAcGCGCUGCUCg -3'
miRNA:   3'- ugCGGCGG-------------UUGuaGCUcUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 31105 0.75 0.164412
Target:  5'- gGC-CCGUCAGCGgcgCGAGuuGCUGCUCg -3'
miRNA:   3'- -UGcGGCGGUUGUa--GCUCugCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 30783 0.76 0.147199
Target:  5'- cGCGCUGCgCgAGCAgcUCGAuGCGCUGCUCg -3'
miRNA:   3'- -UGCGGCG-G-UUGU--AGCUcUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 29979 0.69 0.379163
Target:  5'- cGCGCUGCCAccgGCGcCGAGcgcgagcaccaugcgGCGCcGCUCg -3'
miRNA:   3'- -UGCGGCGGU---UGUaGCUC---------------UGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 29761 0.87 0.022222
Target:  5'- gACGCCGCCGAUcgCGAGGCGUUGCg- -3'
miRNA:   3'- -UGCGGCGGUUGuaGCUCUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 29654 0.68 0.440963
Target:  5'- uUGCCGCCGGCugCGaAGGcCGCUGCa- -3'
miRNA:   3'- uGCGGCGGUUGuaGC-UCU-GCGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.