miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 46754 0.66 0.544322
Target:  5'- gACGCacUCGGCGUCGaAGuguccgccGCGCUGCUCg -3'
miRNA:   3'- -UGCGgcGGUUGUAGC-UC--------UGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 46612 0.71 0.309346
Target:  5'- gACGCC-CCGAUAUCGGGGCGUUaaacuuuaGCUa -3'
miRNA:   3'- -UGCGGcGGUUGUAGCUCUGCGA--------CGAg -5'
17003 3' -56.9 NC_004333.2 + 46550 0.67 0.501797
Target:  5'- uACGCCGCCGACGacgcauUCGAcccgGAUGC-GgUCg -3'
miRNA:   3'- -UGCGGCGGUUGU------AGCU----CUGCGaCgAG- -5'
17003 3' -56.9 NC_004333.2 + 46065 0.75 0.168989
Target:  5'- aACG-CGCCGAguUCGAGGCGaUGCUCg -3'
miRNA:   3'- -UGCgGCGGUUguAGCUCUGCgACGAG- -5'
17003 3' -56.9 NC_004333.2 + 45496 0.72 0.245895
Target:  5'- cCGCCGCCGGCGc---GACGCUGCa- -3'
miRNA:   3'- uGCGGCGGUUGUagcuCUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 45239 0.66 0.544322
Target:  5'- gUGCCGaccuguCCGGCAUCGAagcgcgcguGGCGCcuugGCUCg -3'
miRNA:   3'- uGCGGC------GGUUGUAGCU---------CUGCGa---CGAG- -5'
17003 3' -56.9 NC_004333.2 + 44879 0.67 0.522893
Target:  5'- cGCGCCGCCGcgcgcACAagGAGaaaggGCGUUGCc- -3'
miRNA:   3'- -UGCGGCGGU-----UGUagCUC-----UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 44837 0.7 0.333105
Target:  5'- gACGaCGCUGGCcgCGAGACGCUGaagaagaUCg -3'
miRNA:   3'- -UGCgGCGGUUGuaGCUCUGCGACg------AG- -5'
17003 3' -56.9 NC_004333.2 + 44201 1.09 0.000553
Target:  5'- aACGCCGCCAACAUCGAGACGCUGCUCu -3'
miRNA:   3'- -UGCGGCGGUUGUAGCUCUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 44002 0.68 0.460791
Target:  5'- cACGCCGCugCAGCA-CGAGcgcggcGCGCUGUa- -3'
miRNA:   3'- -UGCGGCG--GUUGUaGCUC------UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 43538 0.68 0.431232
Target:  5'- cCGUCGCCAugAUCGcGAUgGC-GCUCa -3'
miRNA:   3'- uGCGGCGGUugUAGCuCUG-CGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 43076 0.76 0.147199
Target:  5'- gACGCCGC--ACAUCGAGACGCga-UCa -3'
miRNA:   3'- -UGCGGCGguUGUAGCUCUGCGacgAG- -5'
17003 3' -56.9 NC_004333.2 + 42026 0.77 0.111138
Target:  5'- cGCGCgGCCAACGagCGGGGCG-UGCUCg -3'
miRNA:   3'- -UGCGgCGGUUGUa-GCUCUGCgACGAG- -5'
17003 3' -56.9 NC_004333.2 + 41418 0.75 0.17368
Target:  5'- cACG-CGCaCAugAUCGAacaGGCGCUGCUCg -3'
miRNA:   3'- -UGCgGCG-GUugUAGCU---CUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 39970 0.67 0.522893
Target:  5'- cUGCCGCgCAgcguucaaaACGUCucGACGCcGCUCa -3'
miRNA:   3'- uGCGGCG-GU---------UGUAGcuCUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 39888 0.67 0.481082
Target:  5'- cGCGCCGCCuaccuACAUCaagGAGAaaCUGCa- -3'
miRNA:   3'- -UGCGGCGGu----UGUAG---CUCUgcGACGag -5'
17003 3' -56.9 NC_004333.2 + 39757 0.73 0.215542
Target:  5'- aACGUCGgCGGCAccguaUCGGcGACGUUGCUCg -3'
miRNA:   3'- -UGCGGCgGUUGU-----AGCU-CUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 38988 0.71 0.286901
Target:  5'- -gGCCGaUCGACccgaacuggcauGUCGAGGCGCUGCa- -3'
miRNA:   3'- ugCGGC-GGUUG------------UAGCUCUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 38929 0.66 0.566029
Target:  5'- uAUGCCGCacGCggCGAGGCGCccccGUUCg -3'
miRNA:   3'- -UGCGGCGguUGuaGCUCUGCGa---CGAG- -5'
17003 3' -56.9 NC_004333.2 + 38554 0.66 0.53357
Target:  5'- cGCGCCGCCGGCAgcCGGuGCGCaaccgGC-Cg -3'
miRNA:   3'- -UGCGGCGGUUGUa-GCUcUGCGa----CGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.