miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 37456 0.67 0.5123
Target:  5'- aACGgCGCCGACAUUccGGCGCUcGC-Ca -3'
miRNA:   3'- -UGCgGCGGUUGUAGcuCUGCGA-CGaG- -5'
17003 3' -56.9 NC_004333.2 + 46065 0.75 0.168989
Target:  5'- aACG-CGCCGAguUCGAGGCGaUGCUCg -3'
miRNA:   3'- -UGCgGCGGUUguAGCUCUGCgACGAG- -5'
17003 3' -56.9 NC_004333.2 + 10388 0.68 0.450817
Target:  5'- cGCGCCGCUucGCAUCcuuGGC-CUGCUUg -3'
miRNA:   3'- -UGCGGCGGu-UGUAGcu-CUGcGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 30783 0.76 0.147199
Target:  5'- cGCGCUGCgCgAGCAgcUCGAuGCGCUGCUCg -3'
miRNA:   3'- -UGCGGCG-G-UUGU--AGCUcUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 3261 0.81 0.060665
Target:  5'- gGCGCgCGCgAcGCAUCGAGACGCaGCUCg -3'
miRNA:   3'- -UGCG-GCGgU-UGUAGCUCUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 29761 0.87 0.022222
Target:  5'- gACGCCGCCGAUcgCGAGGCGUUGCg- -3'
miRNA:   3'- -UGCGGCGGUUGuaGCUCUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 2890 0.67 0.522893
Target:  5'- aACGCCuCgAGCuUCGGGACGUcGUUCg -3'
miRNA:   3'- -UGCGGcGgUUGuAGCUCUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 44201 1.09 0.000553
Target:  5'- aACGCCGCCAACAUCGAGACGCUGCUCu -3'
miRNA:   3'- -UGCGGCGGUUGUAGCUCUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 4314 0.68 0.460791
Target:  5'- gUGCCGCgAGCAcCGGG-UGCUGCg- -3'
miRNA:   3'- uGCGGCGgUUGUaGCUCuGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 44002 0.68 0.460791
Target:  5'- cACGCCGCugCAGCA-CGAGcgcggcGCGCUGUa- -3'
miRNA:   3'- -UGCGGCG--GUUGUaGCUC------UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 39757 0.73 0.215542
Target:  5'- aACGUCGgCGGCAccguaUCGGcGACGUUGCUCg -3'
miRNA:   3'- -UGCGGCgGUUGU-----AGCU-CUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 9658 0.73 0.226679
Target:  5'- cGCGUCGCacaGAUcgacaaagaacguGUCGAGGCGCUGCg- -3'
miRNA:   3'- -UGCGGCGg--UUG-------------UAGCUCUGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 43538 0.68 0.431232
Target:  5'- cCGUCGCCAugAUCGcGAUgGC-GCUCa -3'
miRNA:   3'- uGCGGCGGUugUAGCuCUG-CGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 44879 0.67 0.522893
Target:  5'- cGCGCCGCCGcgcgcACAagGAGaaaggGCGUUGCc- -3'
miRNA:   3'- -UGCGGCGGU-----UGUagCUC-----UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 39970 0.67 0.522893
Target:  5'- cUGCCGCgCAgcguucaaaACGUCucGACGCcGCUCa -3'
miRNA:   3'- uGCGGCG-GU---------UGUAGcuCUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 6631 0.66 0.566029
Target:  5'- -gGUCGUgAGCAUCGcGACGCUGaCg- -3'
miRNA:   3'- ugCGGCGgUUGUAGCuCUGCGAC-Gag -5'
17003 3' -56.9 NC_004333.2 + 5480 0.68 0.439984
Target:  5'- aACGCCGCCcgcucgucggccGGCGUgGAGacgaucgGCGCUGUUg -3'
miRNA:   3'- -UGCGGCGG------------UUGUAgCUC-------UGCGACGAg -5'
17003 3' -56.9 NC_004333.2 + 29654 0.68 0.440963
Target:  5'- uUGCCGCCGGCugCGaAGGcCGCUGCa- -3'
miRNA:   3'- uGCGGCGGUUGuaGC-UCU-GCGACGag -5'
17003 3' -56.9 NC_004333.2 + 24957 0.68 0.450817
Target:  5'- uCGCCGCCGugAUCaAGACgGCgGCg- -3'
miRNA:   3'- uGCGGCGGUugUAGcUCUG-CGaCGag -5'
17003 3' -56.9 NC_004333.2 + 20584 0.72 0.242073
Target:  5'- gGCGCCGCgcuauuCGACGUCGGGcaucaccuuuacuuCGCUGUUCa -3'
miRNA:   3'- -UGCGGCG------GUUGUAGCUCu-------------GCGACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.