miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 3' -56.9 NC_004333.2 + 9204 0.7 0.372446
Target:  5'- uCGAucGCgGUGCGCaccgacuucGCAUCCaUCGCGCCg -3'
miRNA:   3'- uGCU--UG-CACGCGc--------CGUAGG-AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 9310 0.69 0.436557
Target:  5'- cGCGGACG-G-GCGGCGUUCguaugGCGCCc -3'
miRNA:   3'- -UGCUUGCaCgCGCCGUAGGag---UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 9690 0.68 0.473913
Target:  5'- gGCGcuGCGUGCcgucccauuGCGGCAgcgcaaucaucgCgUCGCGCCa -3'
miRNA:   3'- -UGCu-UGCACG---------CGCCGUa-----------GgAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 10297 0.68 0.465912
Target:  5'- ---cACGUuaCGCGGCAUCUuagCACGCCc -3'
miRNA:   3'- ugcuUGCAc-GCGCCGUAGGa--GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 10719 0.68 0.48604
Target:  5'- gGCGAGCGccggaaUGU-CGGCGccguUCgUCACGCCg -3'
miRNA:   3'- -UGCUUGC------ACGcGCCGU----AGgAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 10883 0.67 0.559374
Target:  5'- -aGAACGccgGCGCGacaGUCaCUUGCGCCg -3'
miRNA:   3'- ugCUUGCa--CGCGCcg-UAG-GAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 11212 0.68 0.485024
Target:  5'- cGCGcACGUgauucggGCGCGGC-UCCUUgccgGCGCUc -3'
miRNA:   3'- -UGCuUGCA-------CGCGCCGuAGGAG----UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 11336 0.69 0.446225
Target:  5'- cGCGAugaagGCG-GCGCGGUucGUCgUCACcuuGCCg -3'
miRNA:   3'- -UGCU-----UGCaCGCGCCG--UAGgAGUG---CGG- -5'
17004 3' -56.9 NC_004333.2 + 11715 0.69 0.399132
Target:  5'- gGCG-GCGUGC-UGGCGUCCU-GCGCg -3'
miRNA:   3'- -UGCuUGCACGcGCCGUAGGAgUGCGg -5'
17004 3' -56.9 NC_004333.2 + 12294 0.77 0.132289
Target:  5'- gGCG-GCGcGCauuGCGGCGUCCUgCGCGCCa -3'
miRNA:   3'- -UGCuUGCaCG---CGCCGUAGGA-GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 13196 0.68 0.496258
Target:  5'- uACGAuCGUGUGCaGGCG-CgUCGCGUg -3'
miRNA:   3'- -UGCUuGCACGCG-CCGUaGgAGUGCGg -5'
17004 3' -56.9 NC_004333.2 + 13712 0.67 0.516976
Target:  5'- gACGAACGauaGCGCGucCAUgCUCGUGCCg -3'
miRNA:   3'- -UGCUUGCa--CGCGCc-GUAgGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 13901 0.66 0.577698
Target:  5'- cACGGGC-UGCGCGGCGgcugCCguggCGaucguggccgcugcCGCCa -3'
miRNA:   3'- -UGCUUGcACGCGCCGUa---GGa---GU--------------GCGG- -5'
17004 3' -56.9 NC_004333.2 + 13987 0.67 0.516976
Target:  5'- cGCGAGC-UGCGCGcGCuUCUUUGCGUUu -3'
miRNA:   3'- -UGCUUGcACGCGC-CGuAGGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 14067 0.66 0.617967
Target:  5'- gAUGGGgGUGCGCaGGCAaagCUgaugcagcgcgaucgUCAUGCCg -3'
miRNA:   3'- -UGCUUgCACGCG-CCGUa--GG---------------AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 14235 0.75 0.178623
Target:  5'- uGCGAcgGCGUGCGCGcGCG-CCUCuuucgaGCCg -3'
miRNA:   3'- -UGCU--UGCACGCGC-CGUaGGAGug----CGG- -5'
17004 3' -56.9 NC_004333.2 + 14386 0.66 0.617967
Target:  5'- uCGGcaauuGCcUGCGCGGUcgCCaugaaggcgaguuucUCGCGCCg -3'
miRNA:   3'- uGCU-----UGcACGCGCCGuaGG---------------AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 14829 0.7 0.363824
Target:  5'- cACG-ACG-GCGCGcCGUUCUCGCGCa -3'
miRNA:   3'- -UGCuUGCaCGCGCcGUAGGAGUGCGg -5'
17004 3' -56.9 NC_004333.2 + 16537 0.81 0.071131
Target:  5'- cGCGAGCGgugGCGCaacugcccGGCGUCCgUCACGCUg -3'
miRNA:   3'- -UGCUUGCa--CGCG--------CCGUAGG-AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 16939 0.69 0.408296
Target:  5'- gACGGcgcuGCGccGCGCGGC--CgUCGCGCCg -3'
miRNA:   3'- -UGCU----UGCa-CGCGCCGuaGgAGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.