miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 3' -56.9 NC_004333.2 + 5 0.75 0.188463
Target:  5'- uUGAGCGUcaCGUGcGCGUUCUCGCGCCu -3'
miRNA:   3'- uGCUUGCAc-GCGC-CGUAGGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 219 0.69 0.427011
Target:  5'- uGCGccauaAAUGUGCGUcgGGUcgCCcCACGCCg -3'
miRNA:   3'- -UGC-----UUGCACGCG--CCGuaGGaGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 429 0.66 0.612505
Target:  5'- gACaGGC-UGCGCGGCAgugcggaacgcaaUCUUCACGgCg -3'
miRNA:   3'- -UGcUUGcACGCGCCGU-------------AGGAGUGCgG- -5'
17004 3' -56.9 NC_004333.2 + 796 0.67 0.548671
Target:  5'- uUGAGCGUGC-CGGUcgCCg-GCGCa -3'
miRNA:   3'- uGCUUGCACGcGCCGuaGGagUGCGg -5'
17004 3' -56.9 NC_004333.2 + 1401 0.71 0.307414
Target:  5'- uUGGACGUgccgagcaGCGCGGCGgacaCUUCgACGCCg -3'
miRNA:   3'- uGCUUGCA--------CGCGCCGUa---GGAG-UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 2426 0.72 0.299923
Target:  5'- aGCGGcaGCGUgccuugguacgGCGCGGCGaacaCCUgCGCGCCg -3'
miRNA:   3'- -UGCU--UGCA-----------CGCGCCGUa---GGA-GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 3118 0.69 0.417589
Target:  5'- cCGGGCGcggccGCGCGGUGUUCagcguuugCGCGCCg -3'
miRNA:   3'- uGCUUGCa----CGCGCCGUAGGa-------GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 3223 0.67 0.552945
Target:  5'- cGCcGACGUGCGCGcGCAggauagcugccgacuUCUUCgGCGCg -3'
miRNA:   3'- -UGcUUGCACGCGC-CGU---------------AGGAG-UGCGg -5'
17004 3' -56.9 NC_004333.2 + 3375 0.72 0.2783
Target:  5'- cCGAGCGU-CGCGGCGuauuccuugaUCUUCGCGaCCu -3'
miRNA:   3'- uGCUUGCAcGCGCCGU----------AGGAGUGC-GG- -5'
17004 3' -56.9 NC_004333.2 + 4176 0.68 0.475923
Target:  5'- cGCGcuCGUGCugcaGCGGCGUgugCUUCuGCGCCu -3'
miRNA:   3'- -UGCuuGCACG----CGCCGUA---GGAG-UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 4635 0.68 0.496258
Target:  5'- uGCGAucagGCGCGGuCAUCgUCgagauACGCCa -3'
miRNA:   3'- -UGCUugcaCGCGCC-GUAGgAG-----UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 4735 0.66 0.602686
Target:  5'- aGCGcGCGaUGCGC-GCGUCCgUCA-GCCc -3'
miRNA:   3'- -UGCuUGC-ACGCGcCGUAGG-AGUgCGG- -5'
17004 3' -56.9 NC_004333.2 + 4906 0.66 0.624525
Target:  5'- uGCGAuaGUGCGCcGUcgCCauccaaaacaUCGCGCCg -3'
miRNA:   3'- -UGCUugCACGCGcCGuaGG----------AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 7146 0.69 0.436557
Target:  5'- gACGAuCGUGCGCGcCGUCUUCAUaUCg -3'
miRNA:   3'- -UGCUuGCACGCGCcGUAGGAGUGcGG- -5'
17004 3' -56.9 NC_004333.2 + 8213 0.75 0.169242
Target:  5'- uUGAACGcUGCGCGGCAggaUgACGCCg -3'
miRNA:   3'- uGCUUGC-ACGCGCCGUaggAgUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 8395 0.66 0.591799
Target:  5'- cGCGAGCG-GCGuCGGUcggaucGUCCacugCAgGCCc -3'
miRNA:   3'- -UGCUUGCaCGC-GCCG------UAGGa---GUgCGG- -5'
17004 3' -56.9 NC_004333.2 + 8677 0.66 0.602686
Target:  5'- cCGAuCG-GCGUGuCGUCCgUUACGCCg -3'
miRNA:   3'- uGCUuGCaCGCGCcGUAGG-AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 8781 0.69 0.446225
Target:  5'- gGCGAA-GUcGC-CGGCAaugCCUUGCGCCg -3'
miRNA:   3'- -UGCUUgCA-CGcGCCGUa--GGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 8916 0.68 0.465912
Target:  5'- gGCGucgauGCGcGaCGCGGCuUCgUUCGCGCCg -3'
miRNA:   3'- -UGCu----UGCaC-GCGCCGuAG-GAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 8980 0.67 0.538032
Target:  5'- gUGGGcCGUGCGCGGCGgcgaCCgaCGCGgCg -3'
miRNA:   3'- uGCUU-GCACGCGCCGUa---GGa-GUGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.