Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17004 | 3' | -56.9 | NC_004333.2 | + | 16537 | 0.81 | 0.071131 |
Target: 5'- cGCGAGCGgugGCGCaacugcccGGCGUCCgUCACGCUg -3' miRNA: 3'- -UGCUUGCa--CGCG--------CCGUAGG-AGUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 9204 | 0.7 | 0.372446 |
Target: 5'- uCGAucGCgGUGCGCaccgacuucGCAUCCaUCGCGCCg -3' miRNA: 3'- uGCU--UG-CACGCGc--------CGUAGG-AGUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 20585 | 0.7 | 0.390101 |
Target: 5'- cGCGccGugGUguuucugcagGCGCGGCucggCCUCGCGCa -3' miRNA: 3'- -UGC--UugCA----------CGCGCCGua--GGAGUGCGg -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 46185 | 0.66 | 0.624525 |
Target: 5'- gGCGAcCGaGgGCugGGCGcgUCUCGCGCCg -3' miRNA: 3'- -UGCUuGCaCgCG--CCGUa-GGAGUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 12294 | 0.77 | 0.132289 |
Target: 5'- gGCG-GCGcGCauuGCGGCGUCCUgCGCGCCa -3' miRNA: 3'- -UGCuUGCaCG---CGCCGUAGGA-GUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 37366 | 0.76 | 0.155997 |
Target: 5'- cGCGAcgugcaccGCGUcGCGCGGcCGUCCUCAuCGUCc -3' miRNA: 3'- -UGCU--------UGCA-CGCGCC-GUAGGAGU-GCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 8213 | 0.75 | 0.169242 |
Target: 5'- uUGAACGcUGCGCGGCAggaUgACGCCg -3' miRNA: 3'- uGCUUGC-ACGCGCCGUaggAgUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 14235 | 0.75 | 0.178623 |
Target: 5'- uGCGAcgGCGUGCGCGcGCG-CCUCuuucgaGCCg -3' miRNA: 3'- -UGCU--UGCACGCGC-CGUaGGAGug----CGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 2426 | 0.72 | 0.299923 |
Target: 5'- aGCGGcaGCGUgccuugguacgGCGCGGCGaacaCCUgCGCGCCg -3' miRNA: 3'- -UGCU--UGCA-----------CGCGCCGUa---GGA-GUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 17289 | 0.7 | 0.363824 |
Target: 5'- gUGAACGccggccgGCGCaGCGUCCUCgacAUGCCc -3' miRNA: 3'- uGCUUGCa------CGCGcCGUAGGAG---UGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 36075 | 0.71 | 0.322821 |
Target: 5'- gACGAGCuggcccGUGaCGCGGCG-CUgCGCGCCa -3' miRNA: 3'- -UGCUUG------CAC-GCGCCGUaGGaGUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 32533 | 0.74 | 0.209579 |
Target: 5'- uGCcGACGUcGCGCGGCG-CgCUCGCGUCg -3' miRNA: 3'- -UGcUUGCA-CGCGCCGUaG-GAGUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 29899 | 0.81 | 0.075319 |
Target: 5'- cGCGAuCGggccgcGCGCGGCAUCCUCG-GCCg -3' miRNA: 3'- -UGCUuGCa-----CGCGCCGUAGGAGUgCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 18512 | 0.71 | 0.330739 |
Target: 5'- gACGGACGcUGCaGCGGC--CUUCGCaGCCg -3' miRNA: 3'- -UGCUUGC-ACG-CGCCGuaGGAGUG-CGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 18314 | 0.8 | 0.079743 |
Target: 5'- cACGcGCGUGCGCacgAUCCUCACGCCg -3' miRNA: 3'- -UGCuUGCACGCGccgUAGGAGUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 26481 | 0.74 | 0.198777 |
Target: 5'- gUGAAUGUGCGUcGCGUgCCgCACGCCa -3' miRNA: 3'- uGCUUGCACGCGcCGUA-GGaGUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 37147 | 0.7 | 0.351988 |
Target: 5'- cACGAcGCGaucacGUGCGGCAUCCcgcagcgcggcgaCACGCCg -3' miRNA: 3'- -UGCU-UGCa----CGCGCCGUAGGa------------GUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 45958 | 0.7 | 0.372446 |
Target: 5'- aGCGGAUGUGuCGCGGCgaggcgugguGUCCcggccugccacUCgGCGCCg -3' miRNA: 3'- -UGCUUGCAC-GCGCCG----------UAGG-----------AG-UGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 25406 | 0.78 | 0.111942 |
Target: 5'- gGCGAgcgcgccugcaGCGUGCcgGCGGCggCCgUCACGCCg -3' miRNA: 3'- -UGCU-----------UGCACG--CGCCGuaGG-AGUGCGG- -5' |
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17004 | 3' | -56.9 | NC_004333.2 | + | 46825 | 0.76 | 0.162057 |
Target: 5'- cACGAACGUGCuCGGCAUCgaacggcacaagcugCUCaucgACGCCg -3' miRNA: 3'- -UGCUUGCACGcGCCGUAG---------------GAG----UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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