miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 3' -56.9 NC_004333.2 + 43927 1.12 0.000394
Target:  5'- cACGAACGUGCGCGGCAUCCUCACGCCg -3'
miRNA:   3'- -UGCUUGCACGCGCCGUAGGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 34421 0.89 0.018625
Target:  5'- cGCGAGCGgcGCGCGGCGUCCUaCGCGCUc -3'
miRNA:   3'- -UGCUUGCa-CGCGCCGUAGGA-GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 16537 0.81 0.071131
Target:  5'- cGCGAGCGgugGCGCaacugcccGGCGUCCgUCACGCUg -3'
miRNA:   3'- -UGCUUGCa--CGCG--------CCGUAGG-AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 29899 0.81 0.075319
Target:  5'- cGCGAuCGggccgcGCGCGGCAUCCUCG-GCCg -3'
miRNA:   3'- -UGCUuGCa-----CGCGCCGUAGGAGUgCGG- -5'
17004 3' -56.9 NC_004333.2 + 18314 0.8 0.079743
Target:  5'- cACGcGCGUGCGCacgAUCCUCACGCCg -3'
miRNA:   3'- -UGCuUGCACGCGccgUAGGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 25406 0.78 0.111942
Target:  5'- gGCGAgcgcgccugcaGCGUGCcgGCGGCggCCgUCACGCCg -3'
miRNA:   3'- -UGCU-----------UGCACG--CGCCGuaGG-AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 20416 0.78 0.121721
Target:  5'- gACGAACGUGCGCcugacgggcucGGCggCCgaccagauUCGCGCCg -3'
miRNA:   3'- -UGCUUGCACGCG-----------CCGuaGG--------AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 12294 0.77 0.132289
Target:  5'- gGCG-GCGcGCauuGCGGCGUCCUgCGCGCCa -3'
miRNA:   3'- -UGCuUGCaCG---CGCCGUAGGA-GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 19132 0.77 0.135995
Target:  5'- cGCGAuCGUGgGCGGCgcgGUgCUCGCGCUg -3'
miRNA:   3'- -UGCUuGCACgCGCCG---UAgGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 23053 0.76 0.147695
Target:  5'- cGCGAACGUGCGC-GCcgCCgugCuCGCCg -3'
miRNA:   3'- -UGCUUGCACGCGcCGuaGGa--GuGCGG- -5'
17004 3' -56.9 NC_004333.2 + 37366 0.76 0.155997
Target:  5'- cGCGAcgugcaccGCGUcGCGCGGcCGUCCUCAuCGUCc -3'
miRNA:   3'- -UGCU--------UGCA-CGCGCC-GUAGGAGU-GCGG- -5'
17004 3' -56.9 NC_004333.2 + 46825 0.76 0.162057
Target:  5'- cACGAACGUGCuCGGCAUCgaacggcacaagcugCUCaucgACGCCg -3'
miRNA:   3'- -UGCUUGCACGcGCCGUAG---------------GAG----UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 8213 0.75 0.169242
Target:  5'- uUGAACGcUGCGCGGCAggaUgACGCCg -3'
miRNA:   3'- uGCUUGC-ACGCGCCGUaggAgUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 30700 0.75 0.173876
Target:  5'- uGCGAgcaGCGUgaGCGCGGCggCCUUcgcguuGCGCCa -3'
miRNA:   3'- -UGCU---UGCA--CGCGCCGuaGGAG------UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 14235 0.75 0.178623
Target:  5'- uGCGAcgGCGUGCGCGcGCG-CCUCuuucgaGCCg -3'
miRNA:   3'- -UGCU--UGCACGCGC-CGUaGGAGug----CGG- -5'
17004 3' -56.9 NC_004333.2 + 5 0.75 0.188463
Target:  5'- uUGAGCGUcaCGUGcGCGUUCUCGCGCCu -3'
miRNA:   3'- uGCUUGCAc-GCGC-CGUAGGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 26481 0.74 0.198777
Target:  5'- gUGAAUGUGCGUcGCGUgCCgCACGCCa -3'
miRNA:   3'- uGCUUGCACGCGcCGUA-GGaGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 33742 0.74 0.198777
Target:  5'- gACGAGCGUGUGUGGCugAUCgaCugGCg -3'
miRNA:   3'- -UGCUUGCACGCGCCG--UAGgaGugCGg -5'
17004 3' -56.9 NC_004333.2 + 32533 0.74 0.209579
Target:  5'- uGCcGACGUcGCGCGGCG-CgCUCGCGUCg -3'
miRNA:   3'- -UGcUUGCA-CGCGCCGUaG-GAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 32362 0.73 0.245051
Target:  5'- -gGAACGUGCGCaGGCGUCggCGCGaUCg -3'
miRNA:   3'- ugCUUGCACGCG-CCGUAGgaGUGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.