miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 20699 0.69 0.545179
Target:  5'- gGCGUguacggaUCGCAGAcgaaUGCggugaUGACGGCGC-GCg -3'
miRNA:   3'- -CGCA-------AGCGUCU----ACG-----GCUGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 21318 0.7 0.493284
Target:  5'- cGgGcUCGCAGuguuUGCCGagcGCGACGCgacaGCa -3'
miRNA:   3'- -CgCaAGCGUCu---ACGGC---UGCUGCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 22180 0.69 0.557084
Target:  5'- -----gGCGGcgGCCGGCGGCgguucggcgGCUGCg -3'
miRNA:   3'- cgcaagCGUCuaCGGCUGCUG---------CGACG- -5'
17005 5' -54.6 NC_004333.2 + 22330 0.67 0.667269
Target:  5'- gGCGUggcacaacuUCGCcacgaGGAaGCCGACGAaacCUGCg -3'
miRNA:   3'- -CGCA---------AGCG-----UCUaCGGCUGCUgc-GACG- -5'
17005 5' -54.6 NC_004333.2 + 22514 0.74 0.310094
Target:  5'- cGCGUUCGCGacgGCCGGCaaGACGCUuucgaccGCg -3'
miRNA:   3'- -CGCAAGCGUcuaCGGCUG--CUGCGA-------CG- -5'
17005 5' -54.6 NC_004333.2 + 22755 0.68 0.611963
Target:  5'- gGCGUgacgGCcGccGCCGGC-ACGCUGCa -3'
miRNA:   3'- -CGCAag--CGuCuaCGGCUGcUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 22967 0.7 0.471737
Target:  5'- aGCG-UCGCGGgcGUCGACGucgagucGCGCaGCg -3'
miRNA:   3'- -CGCaAGCGUCuaCGGCUGC-------UGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 23183 0.66 0.72173
Target:  5'- aGCGUgacaggcggCGCGGAcGCaGACGuuGCGCUcGCg -3'
miRNA:   3'- -CGCAa--------GCGUCUaCGgCUGC--UGCGA-CG- -5'
17005 5' -54.6 NC_004333.2 + 23484 0.67 0.656233
Target:  5'- cGCGcgCGCGGAUcggcaugcaGuuGAuCGGCGCaGCg -3'
miRNA:   3'- -CGCaaGCGUCUA---------CggCU-GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 23657 0.68 0.623028
Target:  5'- aGCGuUUCGCAGAUcGCgGuguGAUGCUGa -3'
miRNA:   3'- -CGC-AAGCGUCUA-CGgCug-CUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 23895 0.67 0.678272
Target:  5'- cCGUUCaucguGCGGAaGCCGAaCGGCGCg-- -3'
miRNA:   3'- cGCAAG-----CGUCUaCGGCU-GCUGCGacg -5'
17005 5' -54.6 NC_004333.2 + 25205 0.67 0.656233
Target:  5'- cGCGacucgaCGUcGAcGCCcGCGACGCUGCc -3'
miRNA:   3'- -CGCaa----GCGuCUaCGGcUGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 25295 0.69 0.546258
Target:  5'- gGCG-UCGCAaccgggccGAcGCCGGCGACuGCcGCg -3'
miRNA:   3'- -CGCaAGCGU--------CUaCGGCUGCUG-CGaCG- -5'
17005 5' -54.6 NC_004333.2 + 25412 0.69 0.524816
Target:  5'- cGCGccUGCAGcGUGCCGGCGGCGgCcGUc -3'
miRNA:   3'- -CGCaaGCGUC-UACGGCUGCUGC-GaCG- -5'
17005 5' -54.6 NC_004333.2 + 25940 0.72 0.386255
Target:  5'- cGCGcggCGC-GAUGCCGGCGgccaguacgcgGCGCUGg -3'
miRNA:   3'- -CGCaa-GCGuCUACGGCUGC-----------UGCGACg -5'
17005 5' -54.6 NC_004333.2 + 26804 0.69 0.567971
Target:  5'- cGCGcUUCGU---UGCCGACGGCccggcCUGCa -3'
miRNA:   3'- -CGC-AAGCGucuACGGCUGCUGc----GACG- -5'
17005 5' -54.6 NC_004333.2 + 26952 0.66 0.752378
Target:  5'- cCGUUC-CAGAUGCgcgCGACGGcCGCccauugaUGCg -3'
miRNA:   3'- cGCAAGcGUCUACG---GCUGCU-GCG-------ACG- -5'
17005 5' -54.6 NC_004333.2 + 27667 0.67 0.667269
Target:  5'- aGCGgcgCgGCGGcgGCCGGCaGCgGUUGCg -3'
miRNA:   3'- -CGCaa-G-CGUCuaCGGCUGcUG-CGACG- -5'
17005 5' -54.6 NC_004333.2 + 28259 0.71 0.433042
Target:  5'- cGCGcucgUCGUcgauGAUGCgGACGGCGCggaugGCc -3'
miRNA:   3'- -CGCa---AGCGu---CUACGgCUGCUGCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 28666 0.67 0.645173
Target:  5'- cGCGgUCGCAGAauuCCGguGCG-UGCUGCu -3'
miRNA:   3'- -CGCaAGCGUCUac-GGC--UGCuGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.