miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 11224 0.67 0.656233
Target:  5'- uCGggCGCGGcuccuUGCCGGCGcucgagUGCUGCc -3'
miRNA:   3'- cGCaaGCGUCu----ACGGCUGCu-----GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 11280 0.68 0.634102
Target:  5'- -aGUUCGCGu-UGCCG-CG-CGCUGUu -3'
miRNA:   3'- cgCAAGCGUcuACGGCuGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 11892 0.66 0.72173
Target:  5'- cGCGUaUCGCAuGgcGCagGACGucgcguguCGCUGCa -3'
miRNA:   3'- -CGCA-AGCGU-CuaCGg-CUGCu-------GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 13134 0.66 0.720658
Target:  5'- uGCGUcaUGCuGAUGCCGGCGAacgaauaCGUcgGCu -3'
miRNA:   3'- -CGCAa-GCGuCUACGGCUGCU-------GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 14097 0.68 0.611963
Target:  5'- cGCGaUCGUc-AUGCCGuCGACGCUa- -3'
miRNA:   3'- -CGCaAGCGucUACGGCuGCUGCGAcg -5'
17005 5' -54.6 NC_004333.2 + 14823 0.66 0.753418
Target:  5'- cGCGagcaggucaUUCGCAGAccacggcgUGCCGAucagaaugacgcCGGagaGCUGCu -3'
miRNA:   3'- -CGC---------AAGCGUCU--------ACGGCU------------GCUg--CGACG- -5'
17005 5' -54.6 NC_004333.2 + 15200 0.68 0.5943
Target:  5'- cGCGUUC-CAGcacuAUGCCGAagucgcaaagcugccCGACGC-GCa -3'
miRNA:   3'- -CGCAAGcGUC----UACGGCU---------------GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 15499 0.66 0.742965
Target:  5'- gGCuGcUCGCGGcgGucaCCGGCGGCGCgucaaGCg -3'
miRNA:   3'- -CG-CaAGCGUCuaC---GGCUGCUGCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 15806 0.67 0.656233
Target:  5'- aGCGUUCGaucgcGCCGACG-C-CUGCg -3'
miRNA:   3'- -CGCAAGCgucuaCGGCUGCuGcGACG- -5'
17005 5' -54.6 NC_004333.2 + 16315 0.68 0.611963
Target:  5'- cGCGaUUCaGCAGAUGCaGGCaaacaaccCGCUGCa -3'
miRNA:   3'- -CGC-AAG-CGUCUACGgCUGcu------GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 16880 0.68 0.634102
Target:  5'- gGCGUcggCGCAGGUGCgGcCGGucuCGCcgGCa -3'
miRNA:   3'- -CGCAa--GCGUCUACGgCuGCU---GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 17128 0.66 0.710972
Target:  5'- gGCGUgaauauccaGCAGGacgUGCCGcAC-AUGCUGCa -3'
miRNA:   3'- -CGCAag-------CGUCU---ACGGC-UGcUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 17432 0.66 0.710972
Target:  5'- aGCGaUUCGguGAguaccUCGGCGACGCcacgGCc -3'
miRNA:   3'- -CGC-AAGCguCUac---GGCUGCUGCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 18209 0.66 0.753418
Target:  5'- cGCGgcaUCGCaauacgcgccGGAaaucuacgacGCCGACGgcACGCUGCu -3'
miRNA:   3'- -CGCa--AGCG----------UCUa---------CGGCUGC--UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 18288 0.7 0.507896
Target:  5'- cGCGgcccgaucgCGCAGcgcuucGCCGACGAcuaccgcgcgcgcuuCGCUGCg -3'
miRNA:   3'- -CGCaa-------GCGUCua----CGGCUGCU---------------GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 18486 0.72 0.404569
Target:  5'- gGCGUacccgccgUUGCcGGcacGCCGACgGACGCUGCa -3'
miRNA:   3'- -CGCA--------AGCGuCUa--CGGCUG-CUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 19048 0.67 0.667269
Target:  5'- uGCGaUgGCGGAUGCUGACcGucCGCcgGCu -3'
miRNA:   3'- -CGCaAgCGUCUACGGCUG-Cu-GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 19432 0.7 0.514215
Target:  5'- cGCGgcgcucgCGCAGuUGCUGGcCGAC-CUGCg -3'
miRNA:   3'- -CGCaa-----GCGUCuACGGCU-GCUGcGACG- -5'
17005 5' -54.6 NC_004333.2 + 19622 0.67 0.656233
Target:  5'- gGCGagCGCGGcgaGCgCGGcCGACGCUGg -3'
miRNA:   3'- -CGCaaGCGUCua-CG-GCU-GCUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 20519 0.75 0.266451
Target:  5'- cGCGacUCGCAGGUGUcaauguuCGcCGACGCUGUg -3'
miRNA:   3'- -CGCa-AGCGUCUACG-------GCuGCUGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.