miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 14097 0.68 0.611963
Target:  5'- cGCGaUCGUc-AUGCCGuCGACGCUa- -3'
miRNA:   3'- -CGCaAGCGucUACGGCuGCUGCGAcg -5'
17005 5' -54.6 NC_004333.2 + 43236 0.69 0.557084
Target:  5'- uGCGUUCGCA--UGCCcGCGcCGCaucUGCc -3'
miRNA:   3'- -CGCAAGCGUcuACGGcUGCuGCG---ACG- -5'
17005 5' -54.6 NC_004333.2 + 28855 0.71 0.45266
Target:  5'- uGCGUUCGUA---GCCGGCG-CGCUcaaGCg -3'
miRNA:   3'- -CGCAAGCGUcuaCGGCUGCuGCGA---CG- -5'
17005 5' -54.6 NC_004333.2 + 29868 0.75 0.260351
Target:  5'- aGCGcgCGCGGuagucGUCGGCGaaGCGCUGCg -3'
miRNA:   3'- -CGCaaGCGUCua---CGGCUGC--UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 9459 0.67 0.678272
Target:  5'- uGCGcaccaggCGCGGGUGCCGcaccgccgcCGA-GCUGCu -3'
miRNA:   3'- -CGCaa-----GCGUCUACGGCu--------GCUgCGACG- -5'
17005 5' -54.6 NC_004333.2 + 31265 0.67 0.655127
Target:  5'- gGUGUUCGuCAGugcaagcaccAUGCCGGCGAgaccggcCGCaccUGCg -3'
miRNA:   3'- -CGCAAGC-GUC----------UACGGCUGCU-------GCG---ACG- -5'
17005 5' -54.6 NC_004333.2 + 22180 0.69 0.557084
Target:  5'- -----gGCGGcgGCCGGCGGCgguucggcgGCUGCg -3'
miRNA:   3'- cgcaagCGUCuaCGGCUGCUG---------CGACG- -5'
17005 5' -54.6 NC_004333.2 + 37198 0.75 0.253706
Target:  5'- aCGcgCGCcGGUGCCGaguuccgccGCGACGCUGUg -3'
miRNA:   3'- cGCaaGCGuCUACGGC---------UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 28666 0.67 0.645173
Target:  5'- cGCGgUCGCAGAauuCCGguGCG-UGCUGCu -3'
miRNA:   3'- -CGCaAGCGUCUac-GGC--UGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 4856 0.76 0.216731
Target:  5'- cGCGcgCGCc-GUGCCGAUGcCGCUGCc -3'
miRNA:   3'- -CGCaaGCGucUACGGCUGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 8511 0.69 0.557084
Target:  5'- cGCGUUCGCgaAGAagucgcccgUGCCGAacaGCGCgaccgGCa -3'
miRNA:   3'- -CGCAAGCG--UCU---------ACGGCUgc-UGCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 33386 0.68 0.611963
Target:  5'- cCGaUCGCGuagaacggcGAUGCCuGCGGCGCaGCg -3'
miRNA:   3'- cGCaAGCGU---------CUACGGcUGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 25412 0.69 0.524816
Target:  5'- cGCGccUGCAGcGUGCCGGCGGCGgCcGUc -3'
miRNA:   3'- -CGCaaGCGUC-UACGGCUGCUGC-GaCG- -5'
17005 5' -54.6 NC_004333.2 + 32527 0.7 0.514215
Target:  5'- aGCGUUUGCcGAcGUCGcGCGGCGCgcucGCg -3'
miRNA:   3'- -CGCAAGCGuCUaCGGC-UGCUGCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 33258 0.71 0.411107
Target:  5'- uGCGUUCGuCGGAUgauugucaaguucaGCCGAgCGcgcGCGUUGCg -3'
miRNA:   3'- -CGCAAGC-GUCUA--------------CGGCU-GC---UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 1123 0.72 0.377306
Target:  5'- cGCGaagUCGguGccGUGCUGcgcGCGACGUUGCa -3'
miRNA:   3'- -CGCa--AGCguC--UACGGC---UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 13134 0.66 0.720658
Target:  5'- uGCGUcaUGCuGAUGCCGGCGAacgaauaCGUcgGCu -3'
miRNA:   3'- -CGCAa-GCGuCUACGGCUGCU-------GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 10200 0.67 0.678272
Target:  5'- cGCGcacgCGCAuGcgGCCGuCGGCaucaaaGCUGCg -3'
miRNA:   3'- -CGCaa--GCGU-CuaCGGCuGCUG------CGACG- -5'
17005 5' -54.6 NC_004333.2 + 19622 0.67 0.656233
Target:  5'- gGCGagCGCGGcgaGCgCGGcCGACGCUGg -3'
miRNA:   3'- -CGCaaGCGUCua-CG-GCU-GCUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 11224 0.67 0.656233
Target:  5'- uCGggCGCGGcuccuUGCCGGCGcucgagUGCUGCc -3'
miRNA:   3'- cGCaaGCGUCu----ACGGCUGCu-----GCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.