miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 28259 0.71 0.433042
Target:  5'- cGCGcucgUCGUcgauGAUGCgGACGGCGCggaugGCc -3'
miRNA:   3'- -CGCa---AGCGu---CUACGgCUGCUGCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 3231 0.71 0.433042
Target:  5'- uGCGcgCGCAGGauagcUGCCGAcuucuuCGGCGC-GCg -3'
miRNA:   3'- -CGCaaGCGUCU-----ACGGCU------GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 9621 0.71 0.44279
Target:  5'- -gGUUgCGCAccGGcUGCCGGCGGCGCgccUGCg -3'
miRNA:   3'- cgCAA-GCGU--CU-ACGGCUGCUGCG---ACG- -5'
17005 5' -54.6 NC_004333.2 + 28855 0.71 0.45266
Target:  5'- uGCGUUCGUA---GCCGGCG-CGCUcaaGCg -3'
miRNA:   3'- -CGCAAGCGUcuaCGGCUGCuGCGA---CG- -5'
17005 5' -54.6 NC_004333.2 + 30042 0.71 0.462649
Target:  5'- gGCGUUCGUcuuGAUGCCGugcuCGAaGUUGUu -3'
miRNA:   3'- -CGCAAGCGu--CUACGGCu---GCUgCGACG- -5'
17005 5' -54.6 NC_004333.2 + 22967 0.7 0.471737
Target:  5'- aGCG-UCGCGGgcGUCGACGucgagucGCGCaGCg -3'
miRNA:   3'- -CGCaAGCGUCuaCGGCUGC-------UGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 21318 0.7 0.493284
Target:  5'- cGgGcUCGCAGuguuUGCCGagcGCGACGCgacaGCa -3'
miRNA:   3'- -CgCaAGCGUCu---ACGGC---UGCUGCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 18288 0.7 0.507896
Target:  5'- cGCGgcccgaucgCGCAGcgcuucGCCGACGAcuaccgcgcgcgcuuCGCUGCg -3'
miRNA:   3'- -CGCaa-------GCGUCua----CGGCUGCU---------------GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 30843 0.7 0.509999
Target:  5'- uGCGUgCGCuauacagcgcgaucAGAucauccucgggcaUGUCGAgGACGCUGCg -3'
miRNA:   3'- -CGCAaGCG--------------UCU-------------ACGGCUgCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 46636 0.7 0.514215
Target:  5'- cGUGUUCaacgAGGUGCCgcuGACGAucaCGCUGCa -3'
miRNA:   3'- -CGCAAGcg--UCUACGG---CUGCU---GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 32527 0.7 0.514215
Target:  5'- aGCGUUUGCcGAcGUCGcGCGGCGCgcucGCg -3'
miRNA:   3'- -CGCAAGCGuCUaCGGC-UGCUGCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 47148 0.7 0.514215
Target:  5'- cGCGUUCGUccccGAUGCgcaucUGACGccggaagaacGCGCUGCc -3'
miRNA:   3'- -CGCAAGCGu---CUACG-----GCUGC----------UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 8685 0.7 0.514215
Target:  5'- gGCGUUCaGCAcggcGAacgUGCCGACcguGACGCcGCu -3'
miRNA:   3'- -CGCAAG-CGU----CU---ACGGCUG---CUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 19432 0.7 0.514215
Target:  5'- cGCGgcgcucgCGCAGuUGCUGGcCGAC-CUGCg -3'
miRNA:   3'- -CGCaa-----GCGUCuACGGCU-GCUGcGACG- -5'
17005 5' -54.6 NC_004333.2 + 44609 0.69 0.524816
Target:  5'- gGCGcacuaUGUGGucgGCCGACG-CGCUGCg -3'
miRNA:   3'- -CGCaa---GCGUCua-CGGCUGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 25412 0.69 0.524816
Target:  5'- cGCGccUGCAGcGUGCCGGCGGCGgCcGUc -3'
miRNA:   3'- -CGCaaGCGUC-UACGGCUGCUGC-GaCG- -5'
17005 5' -54.6 NC_004333.2 + 20699 0.69 0.545179
Target:  5'- gGCGUguacggaUCGCAGAcgaaUGCggugaUGACGGCGC-GCg -3'
miRNA:   3'- -CGCA-------AGCGUCU----ACG-----GCUGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 25295 0.69 0.546258
Target:  5'- gGCG-UCGCAaccgggccGAcGCCGGCGACuGCcGCg -3'
miRNA:   3'- -CGCaAGCGU--------CUaCGGCUGCUG-CGaCG- -5'
17005 5' -54.6 NC_004333.2 + 8511 0.69 0.557084
Target:  5'- cGCGUUCGCgaAGAagucgcccgUGCCGAacaGCGCgaccgGCa -3'
miRNA:   3'- -CGCAAGCG--UCU---------ACGGCUgc-UGCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 22180 0.69 0.557084
Target:  5'- -----gGCGGcgGCCGGCGGCgguucggcgGCUGCg -3'
miRNA:   3'- cgcaagCGUCuaCGGCUGCUG---------CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.