miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 42746 1.13 0.000558
Target:  5'- cGCGUUCGCAGAUGCCGACGACGCUGCc -3'
miRNA:   3'- -CGCAAGCGUCUACGGCUGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 9008 0.82 0.094267
Target:  5'- gGCGUUCGCGGcuUGCCaGGCGGCGC-GCu -3'
miRNA:   3'- -CGCAAGCGUCu-ACGG-CUGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 4856 0.76 0.216731
Target:  5'- cGCGcgCGCc-GUGCCGAUGcCGCUGCc -3'
miRNA:   3'- -CGCaaGCGucUACGGCUGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 40188 0.76 0.222557
Target:  5'- gGCGUUcaucacCGCAGA-GCCGACGACGaagguUGCc -3'
miRNA:   3'- -CGCAA------GCGUCUaCGGCUGCUGCg----ACG- -5'
17005 5' -54.6 NC_004333.2 + 42969 0.76 0.222557
Target:  5'- -aGUUUGCGacGGUGCCGACGccGCGcCUGCa -3'
miRNA:   3'- cgCAAGCGU--CUACGGCUGC--UGC-GACG- -5'
17005 5' -54.6 NC_004333.2 + 37198 0.75 0.253706
Target:  5'- aCGcgCGCcGGUGCCGaguuccgccGCGACGCUGUg -3'
miRNA:   3'- cGCaaGCGuCUACGGC---------UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 29868 0.75 0.260351
Target:  5'- aGCGcgCGCGGuagucGUCGGCGaaGCGCUGCg -3'
miRNA:   3'- -CGCaaGCGUCua---CGGCUGC--UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 20519 0.75 0.266451
Target:  5'- cGCGacUCGCAGGUGUcaauguuCGcCGACGCUGUg -3'
miRNA:   3'- -CGCa-AGCGUCUACG-------GCuGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 37960 0.75 0.267136
Target:  5'- cGCGcgCaGCuuuGAUGCCGACGGcCGCaUGCg -3'
miRNA:   3'- -CGCaaG-CGu--CUACGGCUGCU-GCG-ACG- -5'
17005 5' -54.6 NC_004333.2 + 5516 0.74 0.29571
Target:  5'- gGCGcugUUGCGGGcUGCuCGACGggagACGCUGCg -3'
miRNA:   3'- -CGCa--AGCGUCU-ACG-GCUGC----UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 29746 0.74 0.308555
Target:  5'- cGCGcUCGCGG-UGUCGACGccgccgaucgcgagGCGUUGCg -3'
miRNA:   3'- -CGCaAGCGUCuACGGCUGC--------------UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 22514 0.74 0.310094
Target:  5'- cGCGUUCGCGacgGCCGGCaaGACGCUuucgaccGCg -3'
miRNA:   3'- -CGCAAGCGUcuaCGGCUG--CUGCGA-------CG- -5'
17005 5' -54.6 NC_004333.2 + 1254 0.73 0.318662
Target:  5'- cGCGaggcUUCGCGGc-GCUcGCGGCGCUGCa -3'
miRNA:   3'- -CGC----AAGCGUCuaCGGcUGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 44382 0.73 0.331441
Target:  5'- aGCGUccgcugCGCAGAUcgcgaagGCCGAucagaacgccacguCGACGCUGUa -3'
miRNA:   3'- -CGCAa-----GCGUCUA-------CGGCU--------------GCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 1123 0.72 0.377306
Target:  5'- cGCGaagUCGguGccGUGCUGcgcGCGACGUUGCa -3'
miRNA:   3'- -CGCa--AGCguC--UACGGC---UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 25940 0.72 0.386255
Target:  5'- cGCGcggCGC-GAUGCCGGCGgccaguacgcgGCGCUGg -3'
miRNA:   3'- -CGCaa-GCGuCUACGGCUGC-----------UGCGACg -5'
17005 5' -54.6 NC_004333.2 + 30707 0.72 0.395343
Target:  5'- aGCGUgagCGCGGcgGCCuuCG-CGUUGCg -3'
miRNA:   3'- -CGCAa--GCGUCuaCGGcuGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 18486 0.72 0.404569
Target:  5'- gGCGUacccgccgUUGCcGGcacGCCGACgGACGCUGCa -3'
miRNA:   3'- -CGCA--------AGCGuCUa--CGGCUG-CUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 33258 0.71 0.411107
Target:  5'- uGCGUUCGuCGGAUgauugucaaguucaGCCGAgCGcgcGCGUUGCg -3'
miRNA:   3'- -CGCAAGC-GUCUA--------------CGGCU-GC---UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 48066 0.71 0.413929
Target:  5'- cGCGaugUCGUGcugcucGGUGCCGACGAgGCgcagGCg -3'
miRNA:   3'- -CGCa--AGCGU------CUACGGCUGCUgCGa---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.