miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 9008 0.82 0.094267
Target:  5'- gGCGUUCGCGGcuUGCCaGGCGGCGC-GCu -3'
miRNA:   3'- -CGCAAGCGUCu-ACGG-CUGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 22180 0.69 0.557084
Target:  5'- -----gGCGGcgGCCGGCGGCgguucggcgGCUGCg -3'
miRNA:   3'- cgcaagCGUCuaCGGCUGCUG---------CGACG- -5'
17005 5' -54.6 NC_004333.2 + 43236 0.69 0.557084
Target:  5'- uGCGUUCGCA--UGCCcGCGcCGCaucUGCc -3'
miRNA:   3'- -CGCAAGCGUcuACGGcUGCuGCG---ACG- -5'
17005 5' -54.6 NC_004333.2 + 18209 0.66 0.753418
Target:  5'- cGCGgcaUCGCaauacgcgccGGAaaucuacgacGCCGACGgcACGCUGCu -3'
miRNA:   3'- -CGCa--AGCG----------UCUa---------CGGCUGC--UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 1123 0.72 0.377306
Target:  5'- cGCGaagUCGguGccGUGCUGcgcGCGACGUUGCa -3'
miRNA:   3'- -CGCa--AGCguC--UACGGC---UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 25940 0.72 0.386255
Target:  5'- cGCGcggCGC-GAUGCCGGCGgccaguacgcgGCGCUGg -3'
miRNA:   3'- -CGCaa-GCGuCUACGGCUGC-----------UGCGACg -5'
17005 5' -54.6 NC_004333.2 + 33258 0.71 0.411107
Target:  5'- uGCGUUCGuCGGAUgauugucaaguucaGCCGAgCGcgcGCGUUGCg -3'
miRNA:   3'- -CGCAAGC-GUCUA--------------CGGCU-GC---UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 48066 0.71 0.413929
Target:  5'- cGCGaugUCGUGcugcucGGUGCCGACGAgGCgcagGCg -3'
miRNA:   3'- -CGCa--AGCGU------CUACGGCUGCUgCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 32527 0.7 0.514215
Target:  5'- aGCGUUUGCcGAcGUCGcGCGGCGCgcucGCg -3'
miRNA:   3'- -CGCAAGCGuCUaCGGC-UGCUGCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 25295 0.69 0.546258
Target:  5'- gGCG-UCGCAaccgggccGAcGCCGGCGACuGCcGCg -3'
miRNA:   3'- -CGCaAGCGU--------CUaCGGCUGCUG-CGaCG- -5'
17005 5' -54.6 NC_004333.2 + 47148 0.7 0.514215
Target:  5'- cGCGUUCGUccccGAUGCgcaucUGACGccggaagaacGCGCUGCc -3'
miRNA:   3'- -CGCAAGCGu---CUACG-----GCUGC----------UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 28855 0.71 0.45266
Target:  5'- uGCGUUCGUA---GCCGGCG-CGCUcaaGCg -3'
miRNA:   3'- -CGCAAGCGUcuaCGGCUGCuGCGA---CG- -5'
17005 5' -54.6 NC_004333.2 + 4856 0.76 0.216731
Target:  5'- cGCGcgCGCc-GUGCCGAUGcCGCUGCc -3'
miRNA:   3'- -CGCaaGCGucUACGGCUGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 25412 0.69 0.524816
Target:  5'- cGCGccUGCAGcGUGCCGGCGGCGgCcGUc -3'
miRNA:   3'- -CGCaaGCGUC-UACGGCUGCUGC-GaCG- -5'
17005 5' -54.6 NC_004333.2 + 37198 0.75 0.253706
Target:  5'- aCGcgCGCcGGUGCCGaguuccgccGCGACGCUGUg -3'
miRNA:   3'- cGCaaGCGuCUACGGC---------UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 9621 0.71 0.44279
Target:  5'- -gGUUgCGCAccGGcUGCCGGCGGCGCgccUGCg -3'
miRNA:   3'- cgCAA-GCGU--CU-ACGGCUGCUGCG---ACG- -5'
17005 5' -54.6 NC_004333.2 + 20699 0.69 0.545179
Target:  5'- gGCGUguacggaUCGCAGAcgaaUGCggugaUGACGGCGC-GCg -3'
miRNA:   3'- -CGCA-------AGCGUCU----ACG-----GCUGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 8511 0.69 0.557084
Target:  5'- cGCGUUCGCgaAGAagucgcccgUGCCGAacaGCGCgaccgGCa -3'
miRNA:   3'- -CGCAAGCG--UCU---------ACGGCUgc-UGCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 29868 0.75 0.260351
Target:  5'- aGCGcgCGCGGuagucGUCGGCGaaGCGCUGCg -3'
miRNA:   3'- -CGCaaGCGUCua---CGGCUGC--UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 18486 0.72 0.404569
Target:  5'- gGCGUacccgccgUUGCcGGcacGCCGACgGACGCUGCa -3'
miRNA:   3'- -CGCA--------AGCGuCUa--CGGCUG-CUGCGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.