miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 34285 0.67 0.656233
Target:  5'- cGCcg-CGCAGcccGUGCCGgccgacuucgcGCGGCGCgGCg -3'
miRNA:   3'- -CGcaaGCGUC---UACGGC-----------UGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 31005 0.67 0.700135
Target:  5'- gGgGcUCGCAGcgGCCuuguCGACGC-GCa -3'
miRNA:   3'- -CgCaAGCGUCuaCGGcu--GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 32883 0.67 0.700135
Target:  5'- aGCGcccggUGCuGAUGCUGACcGCGCcGCc -3'
miRNA:   3'- -CGCaa---GCGuCUACGGCUGcUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 2786 0.67 0.689232
Target:  5'- -gGUcUGCGGccuUGCCGACcuGGCGCUGg -3'
miRNA:   3'- cgCAaGCGUCu--ACGGCUG--CUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 29933 0.67 0.689232
Target:  5'- uGCGgauuaGCAGcGUGCCGuCGGCGUcGUa -3'
miRNA:   3'- -CGCaag--CGUC-UACGGCuGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 45492 0.67 0.678272
Target:  5'- uCGgcCGCc---GCCGgcGCGACGCUGCa -3'
miRNA:   3'- cGCaaGCGucuaCGGC--UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 27667 0.67 0.667269
Target:  5'- aGCGgcgCgGCGGcgGCCGGCaGCgGUUGCg -3'
miRNA:   3'- -CGCaa-G-CGUCuaCGGCUGcUG-CGACG- -5'
17005 5' -54.6 NC_004333.2 + 19048 0.67 0.667269
Target:  5'- uGCGaUgGCGGAUGCUGACcGucCGCcgGCu -3'
miRNA:   3'- -CGCaAgCGUCUACGGCUG-Cu-GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 23484 0.67 0.656233
Target:  5'- cGCGcgCGCGGAUcggcaugcaGuuGAuCGGCGCaGCg -3'
miRNA:   3'- -CGCaaGCGUCUA---------CggCU-GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 35063 0.67 0.700135
Target:  5'- cGCaGcUCGC-GAUGCCGuacauCGACaacugGCUGCg -3'
miRNA:   3'- -CG-CaAGCGuCUACGGCu----GCUG-----CGACG- -5'
17005 5' -54.6 NC_004333.2 + 46531 0.67 0.700135
Target:  5'- cGCGcagCGCAuucagggcuacGccGCCGACGACGCauucgacccggaUGCg -3'
miRNA:   3'- -CGCaa-GCGU-----------CuaCGGCUGCUGCG------------ACG- -5'
17005 5' -54.6 NC_004333.2 + 17432 0.66 0.710972
Target:  5'- aGCGaUUCGguGAguaccUCGGCGACGCcacgGCc -3'
miRNA:   3'- -CGC-AAGCguCUac---GGCUGCUGCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 26952 0.66 0.752378
Target:  5'- cCGUUC-CAGAUGCgcgCGACGGcCGCccauugaUGCg -3'
miRNA:   3'- cGCAAGcGUCUACG---GCUGCU-GCG-------ACG- -5'
17005 5' -54.6 NC_004333.2 + 46241 0.66 0.742965
Target:  5'- cGCG-UCGCcGGUGCgGGCcagcuggugcaGACGCgugGCu -3'
miRNA:   3'- -CGCaAGCGuCUACGgCUG-----------CUGCGa--CG- -5'
17005 5' -54.6 NC_004333.2 + 32569 0.66 0.732399
Target:  5'- aCGUUCGCcGAaaccgUGaCCGACGAgcaGCgUGCg -3'
miRNA:   3'- cGCAAGCGuCU-----AC-GGCUGCUg--CG-ACG- -5'
17005 5' -54.6 NC_004333.2 + 34080 0.66 0.732399
Target:  5'- aGCG-UCGaCGGcAUGaCGAUcGCGCUGCa -3'
miRNA:   3'- -CGCaAGC-GUC-UACgGCUGcUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 11892 0.66 0.72173
Target:  5'- cGCGUaUCGCAuGgcGCagGACGucgcguguCGCUGCa -3'
miRNA:   3'- -CGCA-AGCGU-CuaCGg-CUGCu-------GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 23183 0.66 0.72173
Target:  5'- aGCGUgacaggcggCGCGGAcGCaGACGuuGCGCUcGCg -3'
miRNA:   3'- -CGCAa--------GCGUCUaCGgCUGC--UGCGA-CG- -5'
17005 5' -54.6 NC_004333.2 + 29973 0.66 0.710972
Target:  5'- cGCGUaUUGC-GAUGCCGcgcgcACGACGagcGCa -3'
miRNA:   3'- -CGCA-AGCGuCUACGGC-----UGCUGCga-CG- -5'
17005 5' -54.6 NC_004333.2 + 17128 0.66 0.710972
Target:  5'- gGCGUgaauauccaGCAGGacgUGCCGcAC-AUGCUGCa -3'
miRNA:   3'- -CGCAag-------CGUCU---ACGGC-UGcUGCGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.