miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 708 0.69 0.578911
Target:  5'- cGCGgcagUCGCc---GCCGGCG-CGUUGCu -3'
miRNA:   3'- -CGCa---AGCGucuaCGGCUGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 1123 0.72 0.377306
Target:  5'- cGCGaagUCGguGccGUGCUGcgcGCGACGUUGCa -3'
miRNA:   3'- -CGCa--AGCguC--UACGGC---UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 1254 0.73 0.318662
Target:  5'- cGCGaggcUUCGCGGc-GCUcGCGGCGCUGCa -3'
miRNA:   3'- -CGC----AAGCGUCuaCGGcUGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 2458 0.69 0.567971
Target:  5'- aCGUUCGCgccgggcucgAGAUGCaGGCGuGCGUUGUg -3'
miRNA:   3'- cGCAAGCG----------UCUACGgCUGC-UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 2786 0.67 0.689232
Target:  5'- -gGUcUGCGGccuUGCCGACcuGGCGCUGg -3'
miRNA:   3'- cgCAaGCGUCu--ACGGCUG--CUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 2866 0.66 0.72173
Target:  5'- gGCGUUCGC-GAa--CGACGuCGCaGCg -3'
miRNA:   3'- -CGCAAGCGuCUacgGCUGCuGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 3231 0.71 0.433042
Target:  5'- uGCGcgCGCAGGauagcUGCCGAcuucuuCGGCGC-GCg -3'
miRNA:   3'- -CGCaaGCGUCU-----ACGGCU------GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 4856 0.76 0.216731
Target:  5'- cGCGcgCGCc-GUGCCGAUGcCGCUGCc -3'
miRNA:   3'- -CGCaaGCGucUACGGCUGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 5516 0.74 0.29571
Target:  5'- gGCGcugUUGCGGGcUGCuCGACGggagACGCUGCg -3'
miRNA:   3'- -CGCa--AGCGUCU-ACG-GCUGC----UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 8417 0.66 0.742965
Target:  5'- aCG-UCGCcgauacGGUGCCGcCGACGUUGa -3'
miRNA:   3'- cGCaAGCGu-----CUACGGCuGCUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 8511 0.69 0.557084
Target:  5'- cGCGUUCGCgaAGAagucgcccgUGCCGAacaGCGCgaccgGCa -3'
miRNA:   3'- -CGCAAGCG--UCU---------ACGGCUgc-UGCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 8685 0.7 0.514215
Target:  5'- gGCGUUCaGCAcggcGAacgUGCCGACcguGACGCcGCu -3'
miRNA:   3'- -CGCAAG-CGU----CU---ACGGCUG---CUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 9008 0.82 0.094267
Target:  5'- gGCGUUCGCGGcuUGCCaGGCGGCGC-GCu -3'
miRNA:   3'- -CGCAAGCGUCu-ACGG-CUGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 9181 0.66 0.753418
Target:  5'- uGCGUUCguucgcgacgGCAG-UGUCGAUcGCGgUGCg -3'
miRNA:   3'- -CGCAAG----------CGUCuACGGCUGcUGCgACG- -5'
17005 5' -54.6 NC_004333.2 + 9459 0.67 0.678272
Target:  5'- uGCGcaccaggCGCGGGUGCCGcaccgccgcCGA-GCUGCu -3'
miRNA:   3'- -CGCaa-----GCGUCUACGGCu--------GCUgCGACG- -5'
17005 5' -54.6 NC_004333.2 + 9621 0.71 0.44279
Target:  5'- -gGUUgCGCAccGGcUGCCGGCGGCGCgccUGCg -3'
miRNA:   3'- cgCAA-GCGU--CU-ACGGCUGCUGCG---ACG- -5'
17005 5' -54.6 NC_004333.2 + 9658 0.68 0.599812
Target:  5'- cGCG-UCGCacAGAucgacaaagaacgUGUCGA-GGCGCUGCg -3'
miRNA:   3'- -CGCaAGCG--UCU-------------ACGGCUgCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 10167 0.66 0.753418
Target:  5'- cGgGUcggCGCacuGGAaGCCGAgCGACGCggGCa -3'
miRNA:   3'- -CgCAa--GCG---UCUaCGGCU-GCUGCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 10200 0.67 0.678272
Target:  5'- cGCGcacgCGCAuGcgGCCGuCGGCaucaaaGCUGCg -3'
miRNA:   3'- -CGCaa--GCGU-CuaCGGCuGCUG------CGACG- -5'
17005 5' -54.6 NC_004333.2 + 10998 0.68 0.634102
Target:  5'- cGCGUcgugaGCGGcGUGUCGcCG-CGCUGCg -3'
miRNA:   3'- -CGCAag---CGUC-UACGGCuGCuGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.