miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 48066 0.71 0.413929
Target:  5'- cGCGaugUCGUGcugcucGGUGCCGACGAgGCgcagGCg -3'
miRNA:   3'- -CGCa--AGCGU------CUACGGCUGCUgCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 47449 0.66 0.752378
Target:  5'- cCGUUCGaCGcAUcgacuagcaacgcGCCGGCGGCGaCUGCc -3'
miRNA:   3'- cGCAAGC-GUcUA-------------CGGCUGCUGC-GACG- -5'
17005 5' -54.6 NC_004333.2 + 47148 0.7 0.514215
Target:  5'- cGCGUUCGUccccGAUGCgcaucUGACGccggaagaacGCGCUGCc -3'
miRNA:   3'- -CGCAAGCGu---CUACG-----GCUGC----------UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 46636 0.7 0.514215
Target:  5'- cGUGUUCaacgAGGUGCCgcuGACGAucaCGCUGCa -3'
miRNA:   3'- -CGCAAGcg--UCUACGG---CUGCU---GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 46531 0.67 0.700135
Target:  5'- cGCGcagCGCAuucagggcuacGccGCCGACGACGCauucgacccggaUGCg -3'
miRNA:   3'- -CGCaa-GCGU-----------CuaCGGCUGCUGCG------------ACG- -5'
17005 5' -54.6 NC_004333.2 + 46241 0.66 0.742965
Target:  5'- cGCG-UCGCcGGUGCgGGCcagcuggugcaGACGCgugGCu -3'
miRNA:   3'- -CGCaAGCGuCUACGgCUG-----------CUGCGa--CG- -5'
17005 5' -54.6 NC_004333.2 + 45492 0.67 0.678272
Target:  5'- uCGgcCGCc---GCCGgcGCGACGCUGCa -3'
miRNA:   3'- cGCaaGCGucuaCGGC--UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 45177 0.66 0.710972
Target:  5'- cGCGcUUGCuGAUGCgCaGCGGCaGCUGUu -3'
miRNA:   3'- -CGCaAGCGuCUACG-GcUGCUG-CGACG- -5'
17005 5' -54.6 NC_004333.2 + 44609 0.69 0.524816
Target:  5'- gGCGcacuaUGUGGucgGCCGACG-CGCUGCg -3'
miRNA:   3'- -CGCaa---GCGUCua-CGGCUGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 44382 0.73 0.331441
Target:  5'- aGCGUccgcugCGCAGAUcgcgaagGCCGAucagaacgccacguCGACGCUGUa -3'
miRNA:   3'- -CGCAa-----GCGUCUA-------CGGCU--------------GCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 43236 0.69 0.557084
Target:  5'- uGCGUUCGCA--UGCCcGCGcCGCaucUGCc -3'
miRNA:   3'- -CGCAAGCGUcuACGGcUGCuGCG---ACG- -5'
17005 5' -54.6 NC_004333.2 + 42969 0.76 0.222557
Target:  5'- -aGUUUGCGacGGUGCCGACGccGCGcCUGCa -3'
miRNA:   3'- cgCAAGCGU--CUACGGCUGC--UGC-GACG- -5'
17005 5' -54.6 NC_004333.2 + 42746 1.13 0.000558
Target:  5'- cGCGUUCGCAGAUGCCGACGACGCUGCc -3'
miRNA:   3'- -CGCAAGCGUCUACGGCUGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 42291 0.66 0.732399
Target:  5'- cCGgcCGCaAGGUGCCGAcCGAgGCguaucGCg -3'
miRNA:   3'- cGCaaGCG-UCUACGGCU-GCUgCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 40848 0.66 0.753418
Target:  5'- gGCGcgCGCcuucuGGUcGCCGGCGAUGgUcGCg -3'
miRNA:   3'- -CGCaaGCGu----CUA-CGGCUGCUGCgA-CG- -5'
17005 5' -54.6 NC_004333.2 + 40188 0.76 0.222557
Target:  5'- gGCGUUcaucacCGCAGA-GCCGACGACGaagguUGCc -3'
miRNA:   3'- -CGCAA------GCGUCUaCGGCUGCUGCg----ACG- -5'
17005 5' -54.6 NC_004333.2 + 37960 0.75 0.267136
Target:  5'- cGCGcgCaGCuuuGAUGCCGACGGcCGCaUGCg -3'
miRNA:   3'- -CGCaaG-CGu--CUACGGCUGCU-GCG-ACG- -5'
17005 5' -54.6 NC_004333.2 + 37308 0.68 0.600916
Target:  5'- cGCGUUC-CAGucgGUCG-CGGCGgUGCu -3'
miRNA:   3'- -CGCAAGcGUCua-CGGCuGCUGCgACG- -5'
17005 5' -54.6 NC_004333.2 + 37198 0.75 0.253706
Target:  5'- aCGcgCGCcGGUGCCGaguuccgccGCGACGCUGUg -3'
miRNA:   3'- cGCaaGCGuCUACGGC---------UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 35063 0.67 0.700135
Target:  5'- cGCaGcUCGC-GAUGCCGuacauCGACaacugGCUGCg -3'
miRNA:   3'- -CG-CaAGCGuCUACGGCu----GCUG-----CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.