miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 17432 0.66 0.710972
Target:  5'- aGCGaUUCGguGAguaccUCGGCGACGCcacgGCc -3'
miRNA:   3'- -CGC-AAGCguCUac---GGCUGCUGCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 29973 0.66 0.710972
Target:  5'- cGCGUaUUGC-GAUGCCGcgcgcACGACGagcGCa -3'
miRNA:   3'- -CGCA-AGCGuCUACGGC-----UGCUGCga-CG- -5'
17005 5' -54.6 NC_004333.2 + 17128 0.66 0.710972
Target:  5'- gGCGUgaauauccaGCAGGacgUGCCGcAC-AUGCUGCa -3'
miRNA:   3'- -CGCAag-------CGUCU---ACGGC-UGcUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 35063 0.67 0.700135
Target:  5'- cGCaGcUCGC-GAUGCCGuacauCGACaacugGCUGCg -3'
miRNA:   3'- -CG-CaAGCGuCUACGGCu----GCUG-----CGACG- -5'
17005 5' -54.6 NC_004333.2 + 31005 0.67 0.700135
Target:  5'- gGgGcUCGCAGcgGCCuuguCGACGC-GCa -3'
miRNA:   3'- -CgCaAGCGUCuaCGGcu--GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 32883 0.67 0.700135
Target:  5'- aGCGcccggUGCuGAUGCUGACcGCGCcGCc -3'
miRNA:   3'- -CGCaa---GCGuCUACGGCUGcUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 46531 0.67 0.700135
Target:  5'- cGCGcagCGCAuucagggcuacGccGCCGACGACGCauucgacccggaUGCg -3'
miRNA:   3'- -CGCaa-GCGU-----------CuaCGGCUGCUGCG------------ACG- -5'
17005 5' -54.6 NC_004333.2 + 29933 0.67 0.689232
Target:  5'- uGCGgauuaGCAGcGUGCCGuCGGCGUcGUa -3'
miRNA:   3'- -CGCaag--CGUC-UACGGCuGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 2786 0.67 0.689232
Target:  5'- -gGUcUGCGGccuUGCCGACcuGGCGCUGg -3'
miRNA:   3'- cgCAaGCGUCu--ACGGCUG--CUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 10200 0.67 0.678272
Target:  5'- cGCGcacgCGCAuGcgGCCGuCGGCaucaaaGCUGCg -3'
miRNA:   3'- -CGCaa--GCGU-CuaCGGCuGCUG------CGACG- -5'
17005 5' -54.6 NC_004333.2 + 23895 0.67 0.678272
Target:  5'- cCGUUCaucguGCGGAaGCCGAaCGGCGCg-- -3'
miRNA:   3'- cGCAAG-----CGUCUaCGGCU-GCUGCGacg -5'
17005 5' -54.6 NC_004333.2 + 45492 0.67 0.678272
Target:  5'- uCGgcCGCc---GCCGgcGCGACGCUGCa -3'
miRNA:   3'- cGCaaGCGucuaCGGC--UGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 9459 0.67 0.678272
Target:  5'- uGCGcaccaggCGCGGGUGCCGcaccgccgcCGA-GCUGCu -3'
miRNA:   3'- -CGCaa-----GCGUCUACGGCu--------GCUgCGACG- -5'
17005 5' -54.6 NC_004333.2 + 30634 0.67 0.667269
Target:  5'- aGCag-CGCGGcaagGCgCGGCGuGCGCUGCu -3'
miRNA:   3'- -CGcaaGCGUCua--CG-GCUGC-UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 27667 0.67 0.667269
Target:  5'- aGCGgcgCgGCGGcgGCCGGCaGCgGUUGCg -3'
miRNA:   3'- -CGCaa-G-CGUCuaCGGCUGcUG-CGACG- -5'
17005 5' -54.6 NC_004333.2 + 19048 0.67 0.667269
Target:  5'- uGCGaUgGCGGAUGCUGACcGucCGCcgGCu -3'
miRNA:   3'- -CGCaAgCGUCUACGGCUG-Cu-GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 22330 0.67 0.667269
Target:  5'- gGCGUggcacaacuUCGCcacgaGGAaGCCGACGAaacCUGCg -3'
miRNA:   3'- -CGCA---------AGCG-----UCUaCGGCUGCUgc-GACG- -5'
17005 5' -54.6 NC_004333.2 + 34285 0.67 0.656233
Target:  5'- cGCcg-CGCAGcccGUGCCGgccgacuucgcGCGGCGCgGCg -3'
miRNA:   3'- -CGcaaGCGUC---UACGGC-----------UGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 19622 0.67 0.656233
Target:  5'- gGCGagCGCGGcgaGCgCGGcCGACGCUGg -3'
miRNA:   3'- -CGCaaGCGUCua-CG-GCU-GCUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 15806 0.67 0.656233
Target:  5'- aGCGUUCGaucgcGCCGACG-C-CUGCg -3'
miRNA:   3'- -CGCAAGCgucuaCGGCUGCuGcGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.