miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 34285 0.67 0.656233
Target:  5'- cGCcg-CGCAGcccGUGCCGgccgacuucgcGCGGCGCgGCg -3'
miRNA:   3'- -CGcaaGCGUC---UACGGC-----------UGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 23484 0.67 0.656233
Target:  5'- cGCGcgCGCGGAUcggcaugcaGuuGAuCGGCGCaGCg -3'
miRNA:   3'- -CGCaaGCGUCUA---------CggCU-GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 11224 0.67 0.656233
Target:  5'- uCGggCGCGGcuccuUGCCGGCGcucgagUGCUGCc -3'
miRNA:   3'- cGCaaGCGUCu----ACGGCUGCu-----GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 31265 0.67 0.655127
Target:  5'- gGUGUUCGuCAGugcaagcaccAUGCCGGCGAgaccggcCGCaccUGCg -3'
miRNA:   3'- -CGCAAGC-GUC----------UACGGCUGCU-------GCG---ACG- -5'
17005 5' -54.6 NC_004333.2 + 28666 0.67 0.645173
Target:  5'- cGCGgUCGCAGAauuCCGguGCG-UGCUGCu -3'
miRNA:   3'- -CGCaAGCGUCUac-GGC--UGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 28753 0.67 0.645173
Target:  5'- cGCGUgaacgUCGCGGGUaGCgCGGCGuagGCGUaGCg -3'
miRNA:   3'- -CGCA-----AGCGUCUA-CG-GCUGC---UGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 30682 0.68 0.634102
Target:  5'- cCGUUCGCGccGccGCCGGCGGCG--GCa -3'
miRNA:   3'- cGCAAGCGU--CuaCGGCUGCUGCgaCG- -5'
17005 5' -54.6 NC_004333.2 + 10998 0.68 0.634102
Target:  5'- cGCGUcgugaGCGGcGUGUCGcCG-CGCUGCg -3'
miRNA:   3'- -CGCAag---CGUC-UACGGCuGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 11280 0.68 0.634102
Target:  5'- -aGUUCGCGu-UGCCG-CG-CGCUGUu -3'
miRNA:   3'- cgCAAGCGUcuACGGCuGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 16880 0.68 0.634102
Target:  5'- gGCGUcggCGCAGGUGCgGcCGGucuCGCcgGCa -3'
miRNA:   3'- -CGCAa--GCGUCUACGgCuGCU---GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 23657 0.68 0.623028
Target:  5'- aGCGuUUCGCAGAUcGCgGuguGAUGCUGa -3'
miRNA:   3'- -CGC-AAGCGUCUA-CGgCug-CUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 22755 0.68 0.611963
Target:  5'- gGCGUgacgGCcGccGCCGGC-ACGCUGCa -3'
miRNA:   3'- -CGCAag--CGuCuaCGGCUGcUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 16315 0.68 0.611963
Target:  5'- cGCGaUUCaGCAGAUGCaGGCaaacaaccCGCUGCa -3'
miRNA:   3'- -CGC-AAG-CGUCUACGgCUGcu------GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 33386 0.68 0.611963
Target:  5'- cCGaUCGCGuagaacggcGAUGCCuGCGGCGCaGCg -3'
miRNA:   3'- cGCaAGCGU---------CUACGGcUGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 14097 0.68 0.611963
Target:  5'- cGCGaUCGUc-AUGCCGuCGACGCUa- -3'
miRNA:   3'- -CGCaAGCGucUACGGCuGCUGCGAcg -5'
17005 5' -54.6 NC_004333.2 + 37308 0.68 0.600916
Target:  5'- cGCGUUC-CAGucgGUCG-CGGCGgUGCu -3'
miRNA:   3'- -CGCAAGcGUCua-CGGCuGCUGCgACG- -5'
17005 5' -54.6 NC_004333.2 + 9658 0.68 0.599812
Target:  5'- cGCG-UCGCacAGAucgacaaagaacgUGUCGA-GGCGCUGCg -3'
miRNA:   3'- -CGCaAGCG--UCU-------------ACGGCUgCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 15200 0.68 0.5943
Target:  5'- cGCGUUC-CAGcacuAUGCCGAagucgcaaagcugccCGACGC-GCa -3'
miRNA:   3'- -CGCAAGcGUC----UACGGCU---------------GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 708 0.69 0.578911
Target:  5'- cGCGgcagUCGCc---GCCGGCG-CGUUGCu -3'
miRNA:   3'- -CGCa---AGCGucuaCGGCUGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 2458 0.69 0.567971
Target:  5'- aCGUUCGCgccgggcucgAGAUGCaGGCGuGCGUUGUg -3'
miRNA:   3'- cGCAAGCG----------UCUACGgCUGC-UGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.