miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 10200 0.67 0.678272
Target:  5'- cGCGcacgCGCAuGcgGCCGuCGGCaucaaaGCUGCg -3'
miRNA:   3'- -CGCaa--GCGU-CuaCGGCuGCUG------CGACG- -5'
17005 5' -54.6 NC_004333.2 + 28855 0.71 0.45266
Target:  5'- uGCGUUCGUA---GCCGGCG-CGCUcaaGCg -3'
miRNA:   3'- -CGCAAGCGUcuaCGGCUGCuGCGA---CG- -5'
17005 5' -54.6 NC_004333.2 + 42291 0.66 0.732399
Target:  5'- cCGgcCGCaAGGUGCCGAcCGAgGCguaucGCg -3'
miRNA:   3'- cGCaaGCG-UCUACGGCU-GCUgCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 32527 0.7 0.514215
Target:  5'- aGCGUUUGCcGAcGUCGcGCGGCGCgcucGCg -3'
miRNA:   3'- -CGCAAGCGuCUaCGGC-UGCUGCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 28666 0.67 0.645173
Target:  5'- cGCGgUCGCAGAauuCCGguGCG-UGCUGCu -3'
miRNA:   3'- -CGCaAGCGUCUac-GGC--UGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 31265 0.67 0.655127
Target:  5'- gGUGUUCGuCAGugcaagcaccAUGCCGGCGAgaccggcCGCaccUGCg -3'
miRNA:   3'- -CGCAAGC-GUC----------UACGGCUGCU-------GCG---ACG- -5'
17005 5' -54.6 NC_004333.2 + 14823 0.66 0.753418
Target:  5'- cGCGagcaggucaUUCGCAGAccacggcgUGCCGAucagaaugacgcCGGagaGCUGCu -3'
miRNA:   3'- -CGC---------AAGCGUCU--------ACGGCU------------GCUg--CGACG- -5'
17005 5' -54.6 NC_004333.2 + 31230 0.66 0.742965
Target:  5'- cCGgUCGCGacgGCCGcGCGGCGCaGCg -3'
miRNA:   3'- cGCaAGCGUcuaCGGC-UGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 13134 0.66 0.720658
Target:  5'- uGCGUcaUGCuGAUGCCGGCGAacgaauaCGUcgGCu -3'
miRNA:   3'- -CGCAa-GCGuCUACGGCUGCU-------GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 8417 0.66 0.742965
Target:  5'- aCG-UCGCcgauacGGUGCCGcCGACGUUGa -3'
miRNA:   3'- cGCaAGCGu-----CUACGGCuGCUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 23183 0.66 0.72173
Target:  5'- aGCGUgacaggcggCGCGGAcGCaGACGuuGCGCUcGCg -3'
miRNA:   3'- -CGCAa--------GCGUCUaCGgCUGC--UGCGA-CG- -5'
17005 5' -54.6 NC_004333.2 + 42746 1.13 0.000558
Target:  5'- cGCGUUCGCAGAUGCCGACGACGCUGCc -3'
miRNA:   3'- -CGCAAGCGUCUACGGCUGCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 31005 0.67 0.700135
Target:  5'- gGgGcUCGCAGcgGCCuuguCGACGC-GCa -3'
miRNA:   3'- -CgCaAGCGUCuaCGGcu--GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 32883 0.67 0.700135
Target:  5'- aGCGcccggUGCuGAUGCUGACcGCGCcGCc -3'
miRNA:   3'- -CGCaa---GCGuCUACGGCUGcUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 2786 0.67 0.689232
Target:  5'- -gGUcUGCGGccuUGCCGACcuGGCGCUGg -3'
miRNA:   3'- cgCAaGCGUCu--ACGGCUG--CUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 2458 0.69 0.567971
Target:  5'- aCGUUCGCgccgggcucgAGAUGCaGGCGuGCGUUGUg -3'
miRNA:   3'- cGCAAGCG----------UCUACGgCUGC-UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 22755 0.68 0.611963
Target:  5'- gGCGUgacgGCcGccGCCGGC-ACGCUGCa -3'
miRNA:   3'- -CGCAag--CGuCuaCGGCUGcUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 16315 0.68 0.611963
Target:  5'- cGCGaUUCaGCAGAUGCaGGCaaacaaccCGCUGCa -3'
miRNA:   3'- -CGC-AAG-CGUCUACGgCUGcu------GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 9658 0.68 0.599812
Target:  5'- cGCG-UCGCacAGAucgacaaagaacgUGUCGA-GGCGCUGCg -3'
miRNA:   3'- -CGCaAGCG--UCU-------------ACGGCUgCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 15200 0.68 0.5943
Target:  5'- cGCGUUC-CAGcacuAUGCCGAagucgcaaagcugccCGACGC-GCa -3'
miRNA:   3'- -CGCAAGcGUC----UACGGCU---------------GCUGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.