miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 40848 0.67 0.261038
Target:  5'- gGCgCGCGCCuucUgGUCGCCGGCgAUg -3'
miRNA:   3'- -UGaGCGCGGuucGgCAGCGGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 9575 0.67 0.261038
Target:  5'- aGCggCGCGCCcGGCUGUaGCUGGCgcuuCACg -3'
miRNA:   3'- -UGa-GCGCGGuUCGGCAgCGGCCG----GUG- -5'
17006 5' -62.5 NC_004333.2 + 31305 0.67 0.261038
Target:  5'- gGC-CGUGCCGAacagucgcccGUCGaUCGCCuuGGCCGCg -3'
miRNA:   3'- -UGaGCGCGGUU----------CGGC-AGCGG--CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 10994 0.67 0.261038
Target:  5'- gGCgCGCGUCGugagcGGCgUGUCGCCGcGCUGCg -3'
miRNA:   3'- -UGaGCGCGGU-----UCG-GCAGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 10496 0.67 0.261038
Target:  5'- --aCGCGCCGGGCCGgccgacgaGCgGGUCGg -3'
miRNA:   3'- ugaGCGCGGUUCGGCag------CGgCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 215 0.67 0.260391
Target:  5'- gGCUUGCGCCAuaaaugugcgucgGGUCGccccaCGCCGuGCCGu -3'
miRNA:   3'- -UGAGCGCGGU-------------UCGGCa----GCGGC-CGGUg -5'
17006 5' -62.5 NC_004333.2 + 8915 0.67 0.254627
Target:  5'- cGCgCGCGCguGcGCC--UGCCGGCCGCu -3'
miRNA:   3'- -UGaGCGCGguU-CGGcaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 6796 0.67 0.254627
Target:  5'- gACagCGCGCCGAucuucGCCuGUCGCaaCGGCgGCa -3'
miRNA:   3'- -UGa-GCGCGGUU-----CGG-CAGCG--GCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 19622 0.67 0.254627
Target:  5'- gGCgagCGCGgCGagcgcGGCCGaCGCUGGCCGu -3'
miRNA:   3'- -UGa--GCGCgGU-----UCGGCaGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 16875 0.67 0.254627
Target:  5'- uGCUCgGCGUCGgcgcaggugcGGCCGgucUCGCCGGCa-- -3'
miRNA:   3'- -UGAG-CGCGGU----------UCGGC---AGCGGCCGgug -5'
17006 5' -62.5 NC_004333.2 + 7734 0.68 0.248345
Target:  5'- -aUCGuUGaUCAGGCCGUaguucucgagGCCGGCCACg -3'
miRNA:   3'- ugAGC-GC-GGUUCGGCAg---------CGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 17598 0.68 0.248345
Target:  5'- gACUCGCaaucgaucguuGUCAAGa---CGCCGGCCGCg -3'
miRNA:   3'- -UGAGCG-----------CGGUUCggcaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 2687 0.68 0.247724
Target:  5'- aGCgUCGCGCCGgcggcggccgacaGGCCGaucUCGUCGGCgAa -3'
miRNA:   3'- -UG-AGCGCGGU-------------UCGGC---AGCGGCCGgUg -5'
17006 5' -62.5 NC_004333.2 + 6350 0.68 0.242193
Target:  5'- cGCUCGCgGCCGGgcGCCGUCGUgccguCGGgCAg -3'
miRNA:   3'- -UGAGCG-CGGUU--CGGCAGCG-----GCCgGUg -5'
17006 5' -62.5 NC_004333.2 + 1877 0.68 0.240372
Target:  5'- --aCGCGCCuGGCCcggauuggcgggGUCGCCGaucaggaaguaccaGCCACg -3'
miRNA:   3'- ugaGCGCGGuUCGG------------CAGCGGC--------------CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 14752 0.68 0.236167
Target:  5'- gACUCGCgGCUAcgguucGGCgcgcaGUCGCUGcGCCGCa -3'
miRNA:   3'- -UGAGCG-CGGU------UCGg----CAGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 38546 0.68 0.236167
Target:  5'- gGCgcaggCGCGCCGccggcAGCCGgugCGCaacCGGCCGa -3'
miRNA:   3'- -UGa----GCGCGGU-----UCGGCa--GCG---GCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 5518 0.68 0.236167
Target:  5'- cUUCGCggggauauagGUCAuGCCGUgGCCGGCgACg -3'
miRNA:   3'- uGAGCG----------CGGUuCGGCAgCGGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 28527 0.68 0.230268
Target:  5'- uCUcCGUGgCGAGCUGUugacggccagCGUCGGCCGCg -3'
miRNA:   3'- uGA-GCGCgGUUCGGCA----------GCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 30443 0.68 0.230268
Target:  5'- cCUCGCGCCAcGucuguuucaCCGUCGacgucaCGGCUGCg -3'
miRNA:   3'- uGAGCGCGGUuC---------GGCAGCg-----GCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.