miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 9100 0.66 0.295075
Target:  5'- gGCUUGCGCUgucGAGCgcaaUGUCGCC-GCCGa -3'
miRNA:   3'- -UGAGCGCGG---UUCG----GCAGCGGcCGGUg -5'
17006 5' -62.5 NC_004333.2 + 14245 0.66 0.295075
Target:  5'- uGCgcgCGCGCCucuuucGAGCCGagCGgCGGCaCGCc -3'
miRNA:   3'- -UGa--GCGCGG------UUCGGCa-GCgGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 32151 0.66 0.295075
Target:  5'- --aCGCGgCGA-CUGUCggcagGCCGGCCACg -3'
miRNA:   3'- ugaGCGCgGUUcGGCAG-----CGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 9768 0.66 0.295075
Target:  5'- uCUCGauCGCCGucuugaccguGGCCGgcgucaCGCCGGCgCACc -3'
miRNA:   3'- uGAGC--GCGGU----------UCGGCa-----GCGGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 8539 0.66 0.295075
Target:  5'- gUUCGCGUCcGGCagcaGUCGGCCGCu -3'
miRNA:   3'- uGAGCGCGGuUCGgcagCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 17766 0.67 0.288001
Target:  5'- uACggCGCGCgAauucGGuCCGgCGCCGGUCGCu -3'
miRNA:   3'- -UGa-GCGCGgU----UC-GGCaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 31195 0.67 0.288001
Target:  5'- uACUCGacaaCGCCGAcauuuGCCGguuggucaUGCCGGUCGCg -3'
miRNA:   3'- -UGAGC----GCGGUU-----CGGCa-------GCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 22869 0.67 0.288001
Target:  5'- -gUCGCGgCAGucGCCGgCGUCGGCC-Cg -3'
miRNA:   3'- ugAGCGCgGUU--CGGCaGCGGCCGGuG- -5'
17006 5' -62.5 NC_004333.2 + 18486 0.67 0.288001
Target:  5'- ---gGCGUacccGCCGUUGCCGGCaCGCc -3'
miRNA:   3'- ugagCGCGguu-CGGCAGCGGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 20745 0.67 0.281061
Target:  5'- -aUgGCGCCuggucgacAGCCGUCGCCGcGCa-- -3'
miRNA:   3'- ugAgCGCGGu-------UCGGCAGCGGC-CGgug -5'
17006 5' -62.5 NC_004333.2 + 26665 0.67 0.281061
Target:  5'- -aUCGCGCCGgcuGCCGauagCGUCaGGUCGCc -3'
miRNA:   3'- ugAGCGCGGUu--CGGCa---GCGG-CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 21171 0.67 0.281061
Target:  5'- cUUCGCGCU--GCCGcagGCCGGCCuGCu -3'
miRNA:   3'- uGAGCGCGGuuCGGCag-CGGCCGG-UG- -5'
17006 5' -62.5 NC_004333.2 + 8218 0.67 0.281061
Target:  5'- cGCUgCGCGgCAGGauGaCGCCGGcCCGCg -3'
miRNA:   3'- -UGA-GCGCgGUUCggCaGCGGCC-GGUG- -5'
17006 5' -62.5 NC_004333.2 + 47471 0.67 0.279689
Target:  5'- --aCGCGCCGGcggcgacuGCCGcgcugaacgaggCGCCGGCCGg -3'
miRNA:   3'- ugaGCGCGGUU--------CGGCa-----------GCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 17057 0.67 0.274255
Target:  5'- gGCUCGCGCgCGAGCagcaacucgCGcCGCUgacgGGCCAg -3'
miRNA:   3'- -UGAGCGCG-GUUCG---------GCaGCGG----CCGGUg -5'
17006 5' -62.5 NC_004333.2 + 4439 0.67 0.274255
Target:  5'- --cCGCGUu--GuuGUCuGCCGGCCACu -3'
miRNA:   3'- ugaGCGCGguuCggCAG-CGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 31312 0.67 0.26758
Target:  5'- cGC-CGaCGCCGAGCaCGgcgcccgcaaUGCCGGCCAg -3'
miRNA:   3'- -UGaGC-GCGGUUCG-GCa---------GCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 7512 0.67 0.26758
Target:  5'- cGCgagUGCGCCGaacAGU--UCGUCGGCCGCu -3'
miRNA:   3'- -UGa--GCGCGGU---UCGgcAGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 37475 0.67 0.26758
Target:  5'- cGCUCGCcaaacgcaugcaGaUCGAGCaauggGcCGCCGGCCACg -3'
miRNA:   3'- -UGAGCG------------C-GGUUCGg----CaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 31305 0.67 0.261038
Target:  5'- gGC-CGUGCCGAacagucgcccGUCGaUCGCCuuGGCCGCg -3'
miRNA:   3'- -UGaGCGCGGUU----------CGGC-AGCGG--CCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.