miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 20507 0.72 0.125767
Target:  5'- aAC-CGCuGCC-GGCCGcCGCCGcGCCGCu -3'
miRNA:   3'- -UGaGCG-CGGuUCGGCaGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 31128 0.72 0.129214
Target:  5'- uGCUCGCGCgCGAGcCCGgcgaaugcaUCGCCGcCCGCc -3'
miRNA:   3'- -UGAGCGCG-GUUC-GGC---------AGCGGCcGGUG- -5'
17006 5' -62.5 NC_004333.2 + 39799 0.71 0.134912
Target:  5'- cGCUCGCGCUGuGGCCGUCcgaacgcgcauacCCGGCUGCc -3'
miRNA:   3'- -UGAGCGCGGU-UCGGCAGc------------GGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 30190 0.71 0.136372
Target:  5'- gACUCGCGCac-GCCGuUUGCCGugauaGCCGCu -3'
miRNA:   3'- -UGAGCGCGguuCGGC-AGCGGC-----CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 38390 0.71 0.136372
Target:  5'- --gUGCGCC-GGCgUGaCGCCGGCCACg -3'
miRNA:   3'- ugaGCGCGGuUCG-GCaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 39189 0.71 0.136372
Target:  5'- cGC-CGCGUCGGucGCCGccgCGCaCGGCCGCa -3'
miRNA:   3'- -UGaGCGCGGUU--CGGCa--GCG-GCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 45856 0.71 0.136372
Target:  5'- uGCUCGCauuccGCCAguucaacgcGGgCGU-GCCGGCCACg -3'
miRNA:   3'- -UGAGCG-----CGGU---------UCgGCAgCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 4856 0.71 0.140086
Target:  5'- cGCgCGCGCCGuGCCGaUGCCGcuGCCGCc -3'
miRNA:   3'- -UGaGCGCGGUuCGGCaGCGGC--CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 29629 0.71 0.143508
Target:  5'- cGC-CGCGCCGgcugccgcacccgGGuuGcCGCCGGCUGCg -3'
miRNA:   3'- -UGaGCGCGGU-------------UCggCaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 27553 0.71 0.143893
Target:  5'- cGCUCGCGUCGAauuggcccgacuGCgCGagGCCGaGCCGCg -3'
miRNA:   3'- -UGAGCGCGGUU------------CG-GCagCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 32750 0.71 0.151791
Target:  5'- --aCGCGCaggucGCUGcCGCCGGCCAUa -3'
miRNA:   3'- ugaGCGCGguu--CGGCaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 16944 0.71 0.151791
Target:  5'- cGCU-GCGCCGcgcGGCCGUcgCGCCGGCa-- -3'
miRNA:   3'- -UGAgCGCGGU---UCGGCA--GCGGCCGgug -5'
17006 5' -62.5 NC_004333.2 + 22265 0.7 0.160081
Target:  5'- cGCUCuGCGCCAAGCCagcccgagaCGCCGaCCAUg -3'
miRNA:   3'- -UGAG-CGCGGUUCGGca-------GCGGCcGGUG- -5'
17006 5' -62.5 NC_004333.2 + 19288 0.7 0.168776
Target:  5'- gGCcUGCGCCGAGCgCGaUCGCgCGGCacgaGCg -3'
miRNA:   3'- -UGaGCGCGGUUCG-GC-AGCG-GCCGg---UG- -5'
17006 5' -62.5 NC_004333.2 + 30684 0.7 0.177893
Target:  5'- gUUCGCGCC--GCCGcCGgCGGCgGCa -3'
miRNA:   3'- uGAGCGCGGuuCGGCaGCgGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 26709 0.69 0.182613
Target:  5'- -gUCGaUGCCc-GCCG-CGCCGGCCAg -3'
miRNA:   3'- ugAGC-GCGGuuCGGCaGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 48010 0.69 0.182613
Target:  5'- gACUCGCGCCAGgcGCCGaUCGUgugcuCGcGCCGa -3'
miRNA:   3'- -UGAGCGCGGUU--CGGC-AGCG-----GC-CGGUg -5'
17006 5' -62.5 NC_004333.2 + 11844 0.69 0.182613
Target:  5'- aGCUUGCGCCGGuacaucgcuuCCGUCuGCCGGUCGg -3'
miRNA:   3'- -UGAGCGCGGUUc---------GGCAG-CGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 36235 0.69 0.192387
Target:  5'- uGCgUCGCGUCAuaguAGaCC-UCGCCGaGCCACg -3'
miRNA:   3'- -UG-AGCGCGGU----UC-GGcAGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 6470 0.69 0.196933
Target:  5'- -aUCGCGCCGuGCCGcccgaagUUGCCGcCCGCg -3'
miRNA:   3'- ugAGCGCGGUuCGGC-------AGCGGCcGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.