miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 42633 1.09 0.000167
Target:  5'- cACUCGCGCCAAGCCGUCGCCGGCCACg -3'
miRNA:   3'- -UGAGCGCGGUUCGGCAGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 36833 0.79 0.036869
Target:  5'- --gCGCGCUAcGGCCaUCGCCGGCCGCu -3'
miRNA:   3'- ugaGCGCGGU-UCGGcAGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 27294 0.76 0.054798
Target:  5'- cGCU-GCGCCGGGCuCGUCGCCGcCCAUa -3'
miRNA:   3'- -UGAgCGCGGUUCG-GCAGCGGCcGGUG- -5'
17006 5' -62.5 NC_004333.2 + 24470 0.76 0.060807
Target:  5'- aACUCGCG-CGAGCCaaucgcucgguuuucCGCCGGCCACg -3'
miRNA:   3'- -UGAGCGCgGUUCGGca-------------GCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 16999 0.76 0.064858
Target:  5'- aACUCGCGgCAuacGCCGUCGCCGcGCUcgACu -3'
miRNA:   3'- -UGAGCGCgGUu--CGGCAGCGGC-CGG--UG- -5'
17006 5' -62.5 NC_004333.2 + 34206 0.75 0.066699
Target:  5'- aGCUCGCGCgCAccGGCCGccggccugaagUCGCCaaggcGGCCACg -3'
miRNA:   3'- -UGAGCGCG-GU--UCGGC-----------AGCGG-----CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 12173 0.75 0.068783
Target:  5'- uCUCGCGCCGAGCCGcuucuuccggcgucUCauugccuucgaccuuGCCGGCCGg -3'
miRNA:   3'- uGAGCGCGGUUCGGC--------------AG---------------CGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 18193 0.75 0.070535
Target:  5'- uGCUCGCGCuCGGcGCCGguggcaGCgCGGCCGCg -3'
miRNA:   3'- -UGAGCGCG-GUU-CGGCag----CG-GCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 43123 0.74 0.081073
Target:  5'- cGC-CGCGCCGAcGUCGgccaacaGCCGGCCGCc -3'
miRNA:   3'- -UGaGCGCGGUU-CGGCag-----CGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 44973 0.74 0.081073
Target:  5'- gGCggCGCGCCGGGCCGgcUCaCCGGCCuCg -3'
miRNA:   3'- -UGa-GCGCGGUUCGGC--AGcGGCCGGuG- -5'
17006 5' -62.5 NC_004333.2 + 2744 0.74 0.083354
Target:  5'- uGCUCGCGaaugcGCCGUCGCC-GCCGCc -3'
miRNA:   3'- -UGAGCGCgguu-CGGCAGCGGcCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 43308 0.74 0.085696
Target:  5'- cGCUCGUGCCGaucgAGCCGaCGCCggaaaucaugacGGCCAUc -3'
miRNA:   3'- -UGAGCGCGGU----UCGGCaGCGG------------CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 7828 0.74 0.088101
Target:  5'- aGCUCGCucGCCAgaucgacgcGGCCuG-CGCCGGCCAUu -3'
miRNA:   3'- -UGAGCG--CGGU---------UCGG-CaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 25293 0.73 0.092848
Target:  5'- uGCUCgucacgaGCGCCAGuacgaucgcGCCGaUCGCCGGgCCGCa -3'
miRNA:   3'- -UGAG-------CGCGGUU---------CGGC-AGCGGCC-GGUG- -5'
17006 5' -62.5 NC_004333.2 + 41206 0.73 0.103929
Target:  5'- gACUCGUGCgCGAGggcuacCUGUCGCCGGUCGu -3'
miRNA:   3'- -UGAGCGCG-GUUC------GGCAGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 29577 0.73 0.103929
Target:  5'- cGCcCGCGCCu-GCCG-CGCCGGUCGu -3'
miRNA:   3'- -UGaGCGCGGuuCGGCaGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 25295 0.73 0.106815
Target:  5'- gGCgUCGCaaCCGGGCCGaCGCCGGCgACu -3'
miRNA:   3'- -UG-AGCGc-GGUUCGGCaGCGGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 13534 0.72 0.109776
Target:  5'- uGCUCGCGgCGuuGCCGcCGgCGGCCAg -3'
miRNA:   3'- -UGAGCGCgGUu-CGGCaGCgGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 26001 0.72 0.11593
Target:  5'- aAC-CGcCGCC-GGCCGcCGCCGGCgACa -3'
miRNA:   3'- -UGaGC-GCGGuUCGGCaGCGGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 7934 0.72 0.118159
Target:  5'- uAUUCGCGCC--GCUGUCGCCGucggacgaguagucGCCAUa -3'
miRNA:   3'- -UGAGCGCGGuuCGGCAGCGGC--------------CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.