miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 36833 0.79 0.036869
Target:  5'- --gCGCGCUAcGGCCaUCGCCGGCCGCu -3'
miRNA:   3'- ugaGCGCGGU-UCGGcAGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 30684 0.7 0.177893
Target:  5'- gUUCGCGCC--GCCGcCGgCGGCgGCa -3'
miRNA:   3'- uGAGCGCGGuuCGGCaGCgGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 11844 0.69 0.182613
Target:  5'- aGCUUGCGCCGGuacaucgcuuCCGUCuGCCGGUCGg -3'
miRNA:   3'- -UGAGCGCGGUUc---------GGCAG-CGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 28763 0.66 0.33247
Target:  5'- cGC-CGCGUCGA-CCG-CGCgGGUCGCg -3'
miRNA:   3'- -UGaGCGCGGUUcGGCaGCGgCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 7828 0.74 0.088101
Target:  5'- aGCUCGCucGCCAgaucgacgcGGCCuG-CGCCGGCCAUu -3'
miRNA:   3'- -UGAGCG--CGGU---------UCGG-CaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 41206 0.73 0.103929
Target:  5'- gACUCGUGCgCGAGggcuacCUGUCGCCGGUCGu -3'
miRNA:   3'- -UGAGCGCG-GUUC------GGCAGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 13534 0.72 0.109776
Target:  5'- uGCUCGCGgCGuuGCCGcCGgCGGCCAg -3'
miRNA:   3'- -UGAGCGCgGUu-CGGCaGCgGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 7934 0.72 0.118159
Target:  5'- uAUUCGCGCC--GCUGUCGCCGucggacgaguagucGCCAUa -3'
miRNA:   3'- -UGAGCGCGGuuCGGCAGCGGC--------------CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 39799 0.71 0.134912
Target:  5'- cGCUCGCGCUGuGGCCGUCcgaacgcgcauacCCGGCUGCc -3'
miRNA:   3'- -UGAGCGCGGU-UCGGCAGc------------GGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 22265 0.7 0.160081
Target:  5'- cGCUCuGCGCCAAGCCagcccgagaCGCCGaCCAUg -3'
miRNA:   3'- -UGAG-CGCGGUUCGGca-------GCGGCcGGUG- -5'
17006 5' -62.5 NC_004333.2 + 38390 0.71 0.136372
Target:  5'- --gUGCGCC-GGCgUGaCGCCGGCCACg -3'
miRNA:   3'- ugaGCGCGGuUCG-GCaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 31128 0.72 0.129214
Target:  5'- uGCUCGCGCgCGAGcCCGgcgaaugcaUCGCCGcCCGCc -3'
miRNA:   3'- -UGAGCGCG-GUUC-GGC---------AGCGGCcGGUG- -5'
17006 5' -62.5 NC_004333.2 + 16999 0.76 0.064858
Target:  5'- aACUCGCGgCAuacGCCGUCGCCGcGCUcgACu -3'
miRNA:   3'- -UGAGCGCgGUu--CGGCAGCGGC-CGG--UG- -5'
17006 5' -62.5 NC_004333.2 + 4856 0.71 0.140086
Target:  5'- cGCgCGCGCCGuGCCGaUGCCGcuGCCGCc -3'
miRNA:   3'- -UGaGCGCGGUuCGGCaGCGGC--CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 12173 0.75 0.068783
Target:  5'- uCUCGCGCCGAGCCGcuucuuccggcgucUCauugccuucgaccuuGCCGGCCGg -3'
miRNA:   3'- uGAGCGCGGUUCGGC--------------AG---------------CGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 20507 0.72 0.125767
Target:  5'- aAC-CGCuGCC-GGCCGcCGCCGcGCCGCu -3'
miRNA:   3'- -UGaGCG-CGGuUCGGCaGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 32750 0.71 0.151791
Target:  5'- --aCGCGCaggucGCUGcCGCCGGCCAUa -3'
miRNA:   3'- ugaGCGCGguu--CGGCaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 26709 0.69 0.182613
Target:  5'- -gUCGaUGCCc-GCCG-CGCCGGCCAg -3'
miRNA:   3'- ugAGC-GCGGuuCGGCaGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 43308 0.74 0.085696
Target:  5'- cGCUCGUGCCGaucgAGCCGaCGCCggaaaucaugacGGCCAUc -3'
miRNA:   3'- -UGAGCGCGGU----UCGGCaGCGG------------CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 25295 0.73 0.106815
Target:  5'- gGCgUCGCaaCCGGGCCGaCGCCGGCgACu -3'
miRNA:   3'- -UG-AGCGc-GGUUCGGCaGCGGCCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.