miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 36303 0.66 0.33247
Target:  5'- uGCUCGCGCCcguuucGGCCGa--CCGGCagACg -3'
miRNA:   3'- -UGAGCGCGGu-----UCGGCagcGGCCGg-UG- -5'
17006 5' -62.5 NC_004333.2 + 9768 0.66 0.295075
Target:  5'- uCUCGauCGCCGucuugaccguGGCCGgcgucaCGCCGGCgCACc -3'
miRNA:   3'- uGAGC--GCGGU----------UCGGCa-----GCGGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 8539 0.66 0.295075
Target:  5'- gUUCGCGUCcGGCagcaGUCGGCCGCu -3'
miRNA:   3'- uGAGCGCGGuUCGgcagCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 14245 0.66 0.295075
Target:  5'- uGCgcgCGCGCCucuuucGAGCCGagCGgCGGCaCGCc -3'
miRNA:   3'- -UGa--GCGCGG------UUCGGCa-GCgGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 9100 0.66 0.295075
Target:  5'- gGCUUGCGCUgucGAGCgcaaUGUCGCC-GCCGa -3'
miRNA:   3'- -UGAGCGCGG---UUCG----GCAGCGGcCGGUg -5'
17006 5' -62.5 NC_004333.2 + 32151 0.66 0.295075
Target:  5'- --aCGCGgCGA-CUGUCggcagGCCGGCCACg -3'
miRNA:   3'- ugaGCGCgGUUcGGCAG-----CGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 38138 0.66 0.302284
Target:  5'- cUUCGCGUuCGAcGCCGaC-CCGGCCGCc -3'
miRNA:   3'- uGAGCGCG-GUU-CGGCaGcGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 1120 0.66 0.309628
Target:  5'- --gCGCGCgAAGUCGgUGCCGuGCUGCg -3'
miRNA:   3'- ugaGCGCGgUUCGGCaGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 36305 0.66 0.309628
Target:  5'- --aCGCGCCGcccgAGuaGUCGCCGGgCGu -3'
miRNA:   3'- ugaGCGCGGU----UCggCAGCGGCCgGUg -5'
17006 5' -62.5 NC_004333.2 + 19152 0.66 0.302284
Target:  5'- uGCUCGCGCUGguuaucgugcuAGCCGcgcgcgaugCGCacgccgacccggCGGCCGCg -3'
miRNA:   3'- -UGAGCGCGGU-----------UCGGCa--------GCG------------GCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 23057 0.66 0.302284
Target:  5'- aACgugCGCGCC--GCCGugcUCGCCGuGCC-Cg -3'
miRNA:   3'- -UGa--GCGCGGuuCGGC---AGCGGC-CGGuG- -5'
17006 5' -62.5 NC_004333.2 + 22746 0.66 0.308887
Target:  5'- gGCaCGC-CCGgcgugacGGCCGcCGCCGGCaCGCu -3'
miRNA:   3'- -UGaGCGcGGU-------UCGGCaGCGGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 39948 0.66 0.324721
Target:  5'- cCUCGCG-CGGGCCGgCGUCauccuGCCGCg -3'
miRNA:   3'- uGAGCGCgGUUCGGCaGCGGc----CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 17468 0.66 0.324721
Target:  5'- aGCUUGCcagcuuCCAGgacgaaguuGCCGcCGCCGGCgGCg -3'
miRNA:   3'- -UGAGCGc-----GGUU---------CGGCaGCGGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 33944 0.66 0.324721
Target:  5'- gGCgCGCGCgCAcGCCGUCGCaugGGUCu- -3'
miRNA:   3'- -UGaGCGCG-GUuCGGCAGCGg--CCGGug -5'
17006 5' -62.5 NC_004333.2 + 36354 0.66 0.317106
Target:  5'- aGCUggaGCGC---GCCGUCGCgcugaUGGCCGCg -3'
miRNA:   3'- -UGAg--CGCGguuCGGCAGCG-----GCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 4836 0.66 0.317106
Target:  5'- cGCUCGUucuGCCAgauGGCCGUCaugauuuCCGGCguCg -3'
miRNA:   3'- -UGAGCG---CGGU---UCGGCAGc------GGCCGguG- -5'
17006 5' -62.5 NC_004333.2 + 22656 0.66 0.309628
Target:  5'- aGCggCGCGuaCCAAGaCG-CGCuCGGCCGCa -3'
miRNA:   3'- -UGa-GCGC--GGUUCgGCaGCG-GCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 19437 0.66 0.309628
Target:  5'- cGCUCGCGCa-----GUUGCUGGCCGa -3'
miRNA:   3'- -UGAGCGCGguucggCAGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 35790 0.66 0.309628
Target:  5'- cACUggCGCGCCGGGCgGggCGCgGGCgGg -3'
miRNA:   3'- -UGA--GCGCGGUUCGgCa-GCGgCCGgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.