miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 19437 0.66 0.309628
Target:  5'- cGCUCGCGCa-----GUUGCUGGCCGa -3'
miRNA:   3'- -UGAGCGCGguucggCAGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 36303 0.66 0.33247
Target:  5'- uGCUCGCGCCcguuucGGCCGa--CCGGCagACg -3'
miRNA:   3'- -UGAGCGCGGu-----UCGGCagcGGCCGg-UG- -5'
17006 5' -62.5 NC_004333.2 + 35790 0.66 0.309628
Target:  5'- cACUggCGCGCCGGGCgGggCGCgGGCgGg -3'
miRNA:   3'- -UGA--GCGCGGUUCGgCa-GCGgCCGgUg -5'
17006 5' -62.5 NC_004333.2 + 22746 0.66 0.308887
Target:  5'- gGCaCGC-CCGgcgugacGGCCGcCGCCGGCaCGCu -3'
miRNA:   3'- -UGaGCGcGGU-------UCGGCaGCGGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 23057 0.66 0.302284
Target:  5'- aACgugCGCGCC--GCCGugcUCGCCGuGCC-Cg -3'
miRNA:   3'- -UGa--GCGCGGuuCGGC---AGCGGC-CGGuG- -5'
17006 5' -62.5 NC_004333.2 + 40848 0.67 0.261038
Target:  5'- gGCgCGCGCCuucUgGUCGCCGGCgAUg -3'
miRNA:   3'- -UGaGCGCGGuucGgCAGCGGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 4439 0.67 0.274255
Target:  5'- --cCGCGUu--GuuGUCuGCCGGCCACu -3'
miRNA:   3'- ugaGCGCGguuCggCAG-CGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 29960 0.67 0.261038
Target:  5'- aGCgCGUGCCGAGCgCGgccgCGCU-GCCACc -3'
miRNA:   3'- -UGaGCGCGGUUCG-GCa---GCGGcCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 21171 0.67 0.281061
Target:  5'- cUUCGCGCU--GCCGcagGCCGGCCuGCu -3'
miRNA:   3'- uGAGCGCGGuuCGGCag-CGGCCGG-UG- -5'
17006 5' -62.5 NC_004333.2 + 18486 0.67 0.288001
Target:  5'- ---gGCGUacccGCCGUUGCCGGCaCGCc -3'
miRNA:   3'- ugagCGCGguu-CGGCAGCGGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 22869 0.67 0.288001
Target:  5'- -gUCGCGgCAGucGCCGgCGUCGGCC-Cg -3'
miRNA:   3'- ugAGCGCgGUU--CGGCaGCGGCCGGuG- -5'
17006 5' -62.5 NC_004333.2 + 7512 0.67 0.26758
Target:  5'- cGCgagUGCGCCGaacAGU--UCGUCGGCCGCu -3'
miRNA:   3'- -UGa--GCGCGGU---UCGgcAGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 31305 0.67 0.261038
Target:  5'- gGC-CGUGCCGAacagucgcccGUCGaUCGCCuuGGCCGCg -3'
miRNA:   3'- -UGaGCGCGGUU----------CGGC-AGCGG--CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 10496 0.67 0.261038
Target:  5'- --aCGCGCCGGGCCGgccgacgaGCgGGUCGg -3'
miRNA:   3'- ugaGCGCGGUUCGGCag------CGgCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 9575 0.67 0.261038
Target:  5'- aGCggCGCGCCcGGCUGUaGCUGGCgcuuCACg -3'
miRNA:   3'- -UGa-GCGCGGuUCGGCAgCGGCCG----GUG- -5'
17006 5' -62.5 NC_004333.2 + 16875 0.67 0.254627
Target:  5'- uGCUCgGCGUCGgcgcaggugcGGCCGgucUCGCCGGCa-- -3'
miRNA:   3'- -UGAG-CGCGGU----------UCGGC---AGCGGCCGgug -5'
17006 5' -62.5 NC_004333.2 + 8915 0.67 0.254627
Target:  5'- cGCgCGCGCguGcGCC--UGCCGGCCGCu -3'
miRNA:   3'- -UGaGCGCGguU-CGGcaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 10994 0.67 0.261038
Target:  5'- gGCgCGCGUCGugagcGGCgUGUCGCCGcGCUGCg -3'
miRNA:   3'- -UGaGCGCGGU-----UCG-GCAGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 26665 0.67 0.281061
Target:  5'- -aUCGCGCCGgcuGCCGauagCGUCaGGUCGCc -3'
miRNA:   3'- ugAGCGCGGUu--CGGCa---GCGG-CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 31195 0.67 0.288001
Target:  5'- uACUCGacaaCGCCGAcauuuGCCGguuggucaUGCCGGUCGCg -3'
miRNA:   3'- -UGAGC----GCGGUU-----CGGCa-------GCGGCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.