miRNA display CGI


Results 21 - 40 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 45134 0.69 0.196933
Target:  5'- -aUCGCGCCuaccuGUCGUCGCCcgaagucGGCC-Cg -3'
miRNA:   3'- ugAGCGCGGuu---CGGCAGCGG-------CCGGuG- -5'
17006 5' -62.5 NC_004333.2 + 11844 0.69 0.182613
Target:  5'- aGCUUGCGCCGGuacaucgcuuCCGUCuGCCGGUCGg -3'
miRNA:   3'- -UGAGCGCGGUUc---------GGCAG-CGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 31128 0.72 0.129214
Target:  5'- uGCUCGCGCgCGAGcCCGgcgaaugcaUCGCCGcCCGCc -3'
miRNA:   3'- -UGAGCGCG-GUUC-GGC---------AGCGGCcGGUG- -5'
17006 5' -62.5 NC_004333.2 + 43308 0.74 0.085696
Target:  5'- cGCUCGUGCCGaucgAGCCGaCGCCggaaaucaugacGGCCAUc -3'
miRNA:   3'- -UGAGCGCGGU----UCGGCaGCGG------------CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 14423 0.68 0.224494
Target:  5'- uCUCGCGCC--GCCaGUCGaUCaGCCACa -3'
miRNA:   3'- uGAGCGCGGuuCGG-CAGC-GGcCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 13853 0.69 0.202616
Target:  5'- cGC-CGCGUCGAGCgcauugagCG-CGCCGcGCCGCg -3'
miRNA:   3'- -UGaGCGCGGUUCG--------GCaGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 30684 0.7 0.177893
Target:  5'- gUUCGCGCC--GCCGcCGgCGGCgGCa -3'
miRNA:   3'- uGAGCGCGGuuCGGCaGCgGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 12173 0.75 0.068783
Target:  5'- uCUCGCGCCGAGCCGcuucuuccggcgucUCauugccuucgaccuuGCCGGCCGg -3'
miRNA:   3'- uGAGCGCGGUUCGGC--------------AG---------------CGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 2756 0.69 0.197443
Target:  5'- -aUCGCgGCC--GCCGU-GCCGGUCGCg -3'
miRNA:   3'- ugAGCG-CGGuuCGGCAgCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 16999 0.76 0.064858
Target:  5'- aACUCGCGgCAuacGCCGUCGCCGcGCUcgACu -3'
miRNA:   3'- -UGAGCGCgGUu--CGGCAGCGGC-CGG--UG- -5'
17006 5' -62.5 NC_004333.2 + 26709 0.69 0.182613
Target:  5'- -gUCGaUGCCc-GCCG-CGCCGGCCAg -3'
miRNA:   3'- ugAGC-GCGGuuCGGCaGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 2395 0.69 0.197443
Target:  5'- gACg-GCGCC-GGCgGUCGCCuGGUCGCc -3'
miRNA:   3'- -UGagCGCGGuUCGgCAGCGG-CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 4856 0.71 0.140086
Target:  5'- cGCgCGCGCCGuGCCGaUGCCGcuGCCGCc -3'
miRNA:   3'- -UGaGCGCGGUuCGGCaGCGGC--CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 39799 0.71 0.134912
Target:  5'- cGCUCGCGCUGuGGCCGUCcgaacgcgcauacCCGGCUGCc -3'
miRNA:   3'- -UGAGCGCGGU-UCGGCAGc------------GGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 13534 0.72 0.109776
Target:  5'- uGCUCGCGgCGuuGCCGcCGgCGGCCAg -3'
miRNA:   3'- -UGAGCGCgGUu-CGGCaGCgGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 7828 0.74 0.088101
Target:  5'- aGCUCGCucGCCAgaucgacgcGGCCuG-CGCCGGCCAUu -3'
miRNA:   3'- -UGAGCG--CGGU---------UCGG-CaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 37667 0.68 0.230268
Target:  5'- aGCgCGCGcCCGAcCCGcUCGUCGGCCGg -3'
miRNA:   3'- -UGaGCGC-GGUUcGGC-AGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 13732 0.68 0.224494
Target:  5'- uGCUCGUGCCGuugaagucgAGCgCGUaggaCGCCGcgcGCCGCu -3'
miRNA:   3'- -UGAGCGCGGU---------UCG-GCA----GCGGC---CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 12401 0.68 0.218843
Target:  5'- --gCGCGCCAGuGUCGcCGCCuucGGCCAa -3'
miRNA:   3'- ugaGCGCGGUU-CGGCaGCGG---CCGGUg -5'
17006 5' -62.5 NC_004333.2 + 31895 0.69 0.207906
Target:  5'- uGCgaagCGUGCCAAGUCGgaGCCGGUCu- -3'
miRNA:   3'- -UGa---GCGCGGUUCGGCagCGGCCGGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.