miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 8539 0.66 0.295075
Target:  5'- gUUCGCGUCcGGCagcaGUCGGCCGCu -3'
miRNA:   3'- uGAGCGCGGuUCGgcagCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 8915 0.67 0.254627
Target:  5'- cGCgCGCGCguGcGCC--UGCCGGCCGCu -3'
miRNA:   3'- -UGaGCGCGguU-CGGcaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 9100 0.66 0.295075
Target:  5'- gGCUUGCGCUgucGAGCgcaaUGUCGCC-GCCGa -3'
miRNA:   3'- -UGAGCGCGG---UUCG----GCAGCGGcCGGUg -5'
17006 5' -62.5 NC_004333.2 + 9575 0.67 0.261038
Target:  5'- aGCggCGCGCCcGGCUGUaGCUGGCgcuuCACg -3'
miRNA:   3'- -UGa-GCGCGGuUCGGCAgCGGCCG----GUG- -5'
17006 5' -62.5 NC_004333.2 + 9768 0.66 0.295075
Target:  5'- uCUCGauCGCCGucuugaccguGGCCGgcgucaCGCCGGCgCACc -3'
miRNA:   3'- uGAGC--GCGGU----------UCGGCa-----GCGGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 10496 0.67 0.261038
Target:  5'- --aCGCGCCGGGCCGgccgacgaGCgGGUCGg -3'
miRNA:   3'- ugaGCGCGGUUCGGCag------CGgCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 10994 0.67 0.261038
Target:  5'- gGCgCGCGUCGugagcGGCgUGUCGCCGcGCUGCg -3'
miRNA:   3'- -UGaGCGCGGU-----UCG-GCAGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 11289 0.66 0.324721
Target:  5'- uGCcgCGCGCUGuugaacugcGCCGUCGCCuuguugcacuGGUCGCg -3'
miRNA:   3'- -UGa-GCGCGGUu--------CGGCAGCGG----------CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 11844 0.69 0.182613
Target:  5'- aGCUUGCGCCGGuacaucgcuuCCGUCuGCCGGUCGg -3'
miRNA:   3'- -UGAGCGCGGUUc---------GGCAG-CGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 12057 0.69 0.201052
Target:  5'- -gUCGCG-CAGGCCGUCGCCaaccuugcguacguGGCUggcGCg -3'
miRNA:   3'- ugAGCGCgGUUCGGCAGCGG--------------CCGG---UG- -5'
17006 5' -62.5 NC_004333.2 + 12173 0.75 0.068783
Target:  5'- uCUCGCGCCGAGCCGcuucuuccggcgucUCauugccuucgaccuuGCCGGCCGg -3'
miRNA:   3'- uGAGCGCGGUUCGGC--------------AG---------------CGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 12401 0.68 0.218843
Target:  5'- --gCGCGCCAGuGUCGcCGCCuucGGCCAa -3'
miRNA:   3'- ugaGCGCGGUU-CGGCaGCGG---CCGGUg -5'
17006 5' -62.5 NC_004333.2 + 13534 0.72 0.109776
Target:  5'- uGCUCGCGgCGuuGCCGcCGgCGGCCAg -3'
miRNA:   3'- -UGAGCGCgGUu-CGGCaGCgGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 13732 0.68 0.224494
Target:  5'- uGCUCGUGCCGuugaagucgAGCgCGUaggaCGCCGcgcGCCGCu -3'
miRNA:   3'- -UGAGCGCGGU---------UCG-GCA----GCGGC---CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 13853 0.69 0.202616
Target:  5'- cGC-CGCGUCGAGCgcauugagCG-CGCCGcGCCGCg -3'
miRNA:   3'- -UGaGCGCGGUUCG--------GCaGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 14245 0.66 0.295075
Target:  5'- uGCgcgCGCGCCucuuucGAGCCGagCGgCGGCaCGCc -3'
miRNA:   3'- -UGa--GCGCGG------UUCGGCa-GCgGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 14423 0.68 0.224494
Target:  5'- uCUCGCGCC--GCCaGUCGaUCaGCCACa -3'
miRNA:   3'- uGAGCGCGGuuCGG-CAGC-GGcCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 14752 0.68 0.236167
Target:  5'- gACUCGCgGCUAcgguucGGCgcgcaGUCGCUGcGCCGCa -3'
miRNA:   3'- -UGAGCG-CGGU------UCGg----CAGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 16875 0.67 0.254627
Target:  5'- uGCUCgGCGUCGgcgcaggugcGGCCGgucUCGCCGGCa-- -3'
miRNA:   3'- -UGAG-CGCGGU----------UCGGC---AGCGGCCGgug -5'
17006 5' -62.5 NC_004333.2 + 16944 0.71 0.151791
Target:  5'- cGCU-GCGCCGcgcGGCCGUcgCGCCGGCa-- -3'
miRNA:   3'- -UGAgCGCGGU---UCGGCA--GCGGCCGgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.