miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 215 0.67 0.260391
Target:  5'- gGCUUGCGCCAuaaaugugcgucgGGUCGccccaCGCCGuGCCGu -3'
miRNA:   3'- -UGAGCGCGGU-------------UCGGCa----GCGGC-CGGUg -5'
17006 5' -62.5 NC_004333.2 + 1120 0.66 0.309628
Target:  5'- --gCGCGCgAAGUCGgUGCCGuGCUGCg -3'
miRNA:   3'- ugaGCGCGgUUCGGCaGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 1877 0.68 0.240372
Target:  5'- --aCGCGCCuGGCCcggauuggcgggGUCGCCGaucaggaaguaccaGCCACg -3'
miRNA:   3'- ugaGCGCGGuUCGG------------CAGCGGC--------------CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 2395 0.69 0.197443
Target:  5'- gACg-GCGCC-GGCgGUCGCCuGGUCGCc -3'
miRNA:   3'- -UGagCGCGGuUCGgCAGCGG-CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 2687 0.68 0.247724
Target:  5'- aGCgUCGCGCCGgcggcggccgacaGGCCGaucUCGUCGGCgAa -3'
miRNA:   3'- -UG-AGCGCGGU-------------UCGGC---AGCGGCCGgUg -5'
17006 5' -62.5 NC_004333.2 + 2744 0.74 0.083354
Target:  5'- uGCUCGCGaaugcGCCGUCGCC-GCCGCc -3'
miRNA:   3'- -UGAGCGCgguu-CGGCAGCGGcCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 2756 0.69 0.197443
Target:  5'- -aUCGCgGCC--GCCGU-GCCGGUCGCg -3'
miRNA:   3'- ugAGCG-CGGuuCGGCAgCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 4439 0.67 0.274255
Target:  5'- --cCGCGUu--GuuGUCuGCCGGCCACu -3'
miRNA:   3'- ugaGCGCGguuCggCAG-CGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 4836 0.66 0.317106
Target:  5'- cGCUCGUucuGCCAgauGGCCGUCaugauuuCCGGCguCg -3'
miRNA:   3'- -UGAGCG---CGGU---UCGGCAGc------GGCCGguG- -5'
17006 5' -62.5 NC_004333.2 + 4856 0.71 0.140086
Target:  5'- cGCgCGCGCCGuGCCGaUGCCGcuGCCGCc -3'
miRNA:   3'- -UGaGCGCGGUuCGGCaGCGGC--CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 5518 0.68 0.236167
Target:  5'- cUUCGCggggauauagGUCAuGCCGUgGCCGGCgACg -3'
miRNA:   3'- uGAGCG----------CGGUuCGGCAgCGGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 6350 0.68 0.242193
Target:  5'- cGCUCGCgGCCGGgcGCCGUCGUgccguCGGgCAg -3'
miRNA:   3'- -UGAGCG-CGGUU--CGGCAGCG-----GCCgGUg -5'
17006 5' -62.5 NC_004333.2 + 6470 0.69 0.196933
Target:  5'- -aUCGCGCCGuGCCGcccgaagUUGCCGcCCGCg -3'
miRNA:   3'- ugAGCGCGGUuCGGC-------AGCGGCcGGUG- -5'
17006 5' -62.5 NC_004333.2 + 6796 0.67 0.254627
Target:  5'- gACagCGCGCCGAucuucGCCuGUCGCaaCGGCgGCa -3'
miRNA:   3'- -UGa-GCGCGGUU-----CGG-CAGCG--GCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 7512 0.67 0.26758
Target:  5'- cGCgagUGCGCCGaacAGU--UCGUCGGCCGCu -3'
miRNA:   3'- -UGa--GCGCGGU---UCGgcAGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 7734 0.68 0.248345
Target:  5'- -aUCGuUGaUCAGGCCGUaguucucgagGCCGGCCACg -3'
miRNA:   3'- ugAGC-GC-GGUUCGGCAg---------CGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 7828 0.74 0.088101
Target:  5'- aGCUCGCucGCCAgaucgacgcGGCCuG-CGCCGGCCAUu -3'
miRNA:   3'- -UGAGCG--CGGU---------UCGG-CaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 7934 0.72 0.118159
Target:  5'- uAUUCGCGCC--GCUGUCGCCGucggacgaguagucGCCAUa -3'
miRNA:   3'- -UGAGCGCGGuuCGGCAGCGGC--------------CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 8218 0.67 0.281061
Target:  5'- cGCUgCGCGgCAGGauGaCGCCGGcCCGCg -3'
miRNA:   3'- -UGA-GCGCgGUUCggCaGCGGCC-GGUG- -5'
17006 5' -62.5 NC_004333.2 + 8402 0.69 0.196933
Target:  5'- aGCcCGUGUCGAGCaaCGUCGCCGauacgguGCCGCc -3'
miRNA:   3'- -UGaGCGCGGUUCG--GCAGCGGC-------CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.