miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 48010 0.69 0.182613
Target:  5'- gACUCGCGCCAGgcGCCGaUCGUgugcuCGcGCCGa -3'
miRNA:   3'- -UGAGCGCGGUU--CGGC-AGCG-----GC-CGGUg -5'
17006 5' -62.5 NC_004333.2 + 47471 0.67 0.279689
Target:  5'- --aCGCGCCGGcggcgacuGCCGcgcugaacgaggCGCCGGCCGg -3'
miRNA:   3'- ugaGCGCGGUU--------CGGCa-----------GCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 45856 0.71 0.136372
Target:  5'- uGCUCGCauuccGCCAguucaacgcGGgCGU-GCCGGCCACg -3'
miRNA:   3'- -UGAGCG-----CGGU---------UCgGCAgCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 45134 0.69 0.196933
Target:  5'- -aUCGCGCCuaccuGUCGUCGCCcgaagucGGCC-Cg -3'
miRNA:   3'- ugAGCGCGGuu---CGGCAGCGG-------CCGGuG- -5'
17006 5' -62.5 NC_004333.2 + 44973 0.74 0.081073
Target:  5'- gGCggCGCGCCGGGCCGgcUCaCCGGCCuCg -3'
miRNA:   3'- -UGa-GCGCGGUUCGGC--AGcGGCCGGuG- -5'
17006 5' -62.5 NC_004333.2 + 44820 0.66 0.33247
Target:  5'- cGCUCG-GCgAGGacauggaCGaCGCUGGCCGCg -3'
miRNA:   3'- -UGAGCgCGgUUCg------GCaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 43308 0.74 0.085696
Target:  5'- cGCUCGUGCCGaucgAGCCGaCGCCggaaaucaugacGGCCAUc -3'
miRNA:   3'- -UGAGCGCGGU----UCGGCaGCGG------------CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 43123 0.74 0.081073
Target:  5'- cGC-CGCGCCGAcGUCGgccaacaGCCGGCCGCc -3'
miRNA:   3'- -UGaGCGCGGUU-CGGCag-----CGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 42633 1.09 0.000167
Target:  5'- cACUCGCGCCAAGCCGUCGCCGGCCACg -3'
miRNA:   3'- -UGAGCGCGGUUCGGCAGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 41206 0.73 0.103929
Target:  5'- gACUCGUGCgCGAGggcuacCUGUCGCCGGUCGu -3'
miRNA:   3'- -UGAGCGCG-GUUC------GGCAGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 40848 0.67 0.261038
Target:  5'- gGCgCGCGCCuucUgGUCGCCGGCgAUg -3'
miRNA:   3'- -UGaGCGCGGuucGgCAGCGGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 39948 0.66 0.324721
Target:  5'- cCUCGCG-CGGGCCGgCGUCauccuGCCGCg -3'
miRNA:   3'- uGAGCGCgGUUCGGCaGCGGc----CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 39799 0.71 0.134912
Target:  5'- cGCUCGCGCUGuGGCCGUCcgaacgcgcauacCCGGCUGCc -3'
miRNA:   3'- -UGAGCGCGGU-UCGGCAGc------------GGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 39543 0.68 0.230268
Target:  5'- cGC-CGCGCCGAGCucgaCGUCGCgcauCGGCUucguGCa -3'
miRNA:   3'- -UGaGCGCGGUUCG----GCAGCG----GCCGG----UG- -5'
17006 5' -62.5 NC_004333.2 + 39189 0.71 0.136372
Target:  5'- cGC-CGCGUCGGucGCCGccgCGCaCGGCCGCa -3'
miRNA:   3'- -UGaGCGCGGUU--CGGCa--GCG-GCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 38546 0.68 0.236167
Target:  5'- gGCgcaggCGCGCCGccggcAGCCGgugCGCaacCGGCCGa -3'
miRNA:   3'- -UGa----GCGCGGU-----UCGGCa--GCG---GCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 38390 0.71 0.136372
Target:  5'- --gUGCGCC-GGCgUGaCGCCGGCCACg -3'
miRNA:   3'- ugaGCGCGGuUCG-GCaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 38138 0.66 0.302284
Target:  5'- cUUCGCGUuCGAcGCCGaC-CCGGCCGCc -3'
miRNA:   3'- uGAGCGCG-GUU-CGGCaGcGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 37667 0.68 0.230268
Target:  5'- aGCgCGCGcCCGAcCCGcUCGUCGGCCGg -3'
miRNA:   3'- -UGaGCGC-GGUUcGGC-AGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 37475 0.67 0.26758
Target:  5'- cGCUCGCcaaacgcaugcaGaUCGAGCaauggGcCGCCGGCCACg -3'
miRNA:   3'- -UGAGCG------------C-GGUUCGg----CaGCGGCCGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.