miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17006 5' -62.5 NC_004333.2 + 10994 0.67 0.261038
Target:  5'- gGCgCGCGUCGugagcGGCgUGUCGCCGcGCUGCg -3'
miRNA:   3'- -UGaGCGCGGU-----UCG-GCAGCGGC-CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 9768 0.66 0.295075
Target:  5'- uCUCGauCGCCGucuugaccguGGCCGgcgucaCGCCGGCgCACc -3'
miRNA:   3'- uGAGC--GCGGU----------UCGGCa-----GCGGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 8539 0.66 0.295075
Target:  5'- gUUCGCGUCcGGCagcaGUCGGCCGCu -3'
miRNA:   3'- uGAGCGCGGuUCGgcagCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 22869 0.67 0.288001
Target:  5'- -gUCGCGgCAGucGCCGgCGUCGGCC-Cg -3'
miRNA:   3'- ugAGCGCgGUU--CGGCaGCGGCCGGuG- -5'
17006 5' -62.5 NC_004333.2 + 17766 0.67 0.288001
Target:  5'- uACggCGCGCgAauucGGuCCGgCGCCGGUCGCu -3'
miRNA:   3'- -UGa-GCGCGgU----UC-GGCaGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 20745 0.67 0.281061
Target:  5'- -aUgGCGCCuggucgacAGCCGUCGCCGcGCa-- -3'
miRNA:   3'- ugAgCGCGGu-------UCGGCAGCGGC-CGgug -5'
17006 5' -62.5 NC_004333.2 + 17057 0.67 0.274255
Target:  5'- gGCUCGCGCgCGAGCagcaacucgCGcCGCUgacgGGCCAg -3'
miRNA:   3'- -UGAGCGCG-GUUCG---------GCaGCGG----CCGGUg -5'
17006 5' -62.5 NC_004333.2 + 7512 0.67 0.26758
Target:  5'- cGCgagUGCGCCGaacAGU--UCGUCGGCCGCu -3'
miRNA:   3'- -UGa--GCGCGGU---UCGgcAGCGGCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 31305 0.67 0.261038
Target:  5'- gGC-CGUGCCGAacagucgcccGUCGaUCGCCuuGGCCGCg -3'
miRNA:   3'- -UGaGCGCGGUU----------CGGC-AGCGG--CCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 19152 0.66 0.302284
Target:  5'- uGCUCGCGCUGguuaucgugcuAGCCGcgcgcgaugCGCacgccgacccggCGGCCGCg -3'
miRNA:   3'- -UGAGCGCGGU-----------UCGGCa--------GCG------------GCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 23057 0.66 0.302284
Target:  5'- aACgugCGCGCC--GCCGugcUCGCCGuGCC-Cg -3'
miRNA:   3'- -UGa--GCGCGGuuCGGC---AGCGGC-CGGuG- -5'
17006 5' -62.5 NC_004333.2 + 22746 0.66 0.308887
Target:  5'- gGCaCGC-CCGgcgugacGGCCGcCGCCGGCaCGCu -3'
miRNA:   3'- -UGaGCGcGGU-------UCGGCaGCGGCCG-GUG- -5'
17006 5' -62.5 NC_004333.2 + 39948 0.66 0.324721
Target:  5'- cCUCGCG-CGGGCCGgCGUCauccuGCCGCg -3'
miRNA:   3'- uGAGCGCgGUUCGGCaGCGGc----CGGUG- -5'
17006 5' -62.5 NC_004333.2 + 17468 0.66 0.324721
Target:  5'- aGCUUGCcagcuuCCAGgacgaaguuGCCGcCGCCGGCgGCg -3'
miRNA:   3'- -UGAGCGc-----GGUU---------CGGCaGCGGCCGgUG- -5'
17006 5' -62.5 NC_004333.2 + 33944 0.66 0.324721
Target:  5'- gGCgCGCGCgCAcGCCGUCGCaugGGUCu- -3'
miRNA:   3'- -UGaGCGCG-GUuCGGCAGCGg--CCGGug -5'
17006 5' -62.5 NC_004333.2 + 36354 0.66 0.317106
Target:  5'- aGCUggaGCGC---GCCGUCGCgcugaUGGCCGCg -3'
miRNA:   3'- -UGAg--CGCGguuCGGCAGCG-----GCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 4836 0.66 0.317106
Target:  5'- cGCUCGUucuGCCAgauGGCCGUCaugauuuCCGGCguCg -3'
miRNA:   3'- -UGAGCG---CGGU---UCGGCAGc------GGCCGguG- -5'
17006 5' -62.5 NC_004333.2 + 22656 0.66 0.309628
Target:  5'- aGCggCGCGuaCCAAGaCG-CGCuCGGCCGCa -3'
miRNA:   3'- -UGa-GCGC--GGUUCgGCaGCG-GCCGGUG- -5'
17006 5' -62.5 NC_004333.2 + 19437 0.66 0.309628
Target:  5'- cGCUCGCGCa-----GUUGCUGGCCGa -3'
miRNA:   3'- -UGAGCGCGguucggCAGCGGCCGGUg -5'
17006 5' -62.5 NC_004333.2 + 35790 0.66 0.309628
Target:  5'- cACUggCGCGCCGGGCgGggCGCgGGCgGg -3'
miRNA:   3'- -UGA--GCGCGGUUCGgCa-GCGgCCGgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.