miRNA display CGI


Results 41 - 60 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 5' -58.9 NC_004333.2 + 23115 0.68 0.36218
Target:  5'- aCGGCaGCGaCAGCgCgaUCAacuaCGGCGCGa -3'
miRNA:   3'- -GCCGaCGC-GUCG-GaaAGUg---GUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 38712 0.68 0.36218
Target:  5'- gCGGCgGUGCGGCacccgCGCCugguGCGCa -3'
miRNA:   3'- -GCCGaCGCGUCGgaaa-GUGGu---CGCGc -5'
17008 5' -58.9 NC_004333.2 + 38757 0.68 0.36218
Target:  5'- aCGGCgUGCGCAGCC---CGCagGGCaGCGa -3'
miRNA:   3'- -GCCG-ACGCGUCGGaaaGUGg-UCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 8218 0.68 0.353719
Target:  5'- -cGCUGCGCGGCaggaUgaCGCCGgcccGCGCGa -3'
miRNA:   3'- gcCGACGCGUCGg---AaaGUGGU----CGCGC- -5'
17008 5' -58.9 NC_004333.2 + 25404 0.68 0.353719
Target:  5'- cCGGCgaGCGC-GCCUgcagcgUGCCGGCgGCGg -3'
miRNA:   3'- -GCCGa-CGCGuCGGAaa----GUGGUCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 19629 0.68 0.353719
Target:  5'- gCGGCgaGCGCGGCCga-CGCUGGC-CGu -3'
miRNA:   3'- -GCCGa-CGCGUCGGaaaGUGGUCGcGC- -5'
17008 5' -58.9 NC_004333.2 + 20553 0.68 0.353719
Target:  5'- uGGCcGCGCcGCUgaUCGUCGGCGCGu -3'
miRNA:   3'- gCCGaCGCGuCGGaaAGUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 1230 0.68 0.353719
Target:  5'- uCGGCgcGCGCcGCCUUggCugC-GCGCGa -3'
miRNA:   3'- -GCCGa-CGCGuCGGAAa-GugGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 33295 0.68 0.34871
Target:  5'- gCGcGUUGCGuCGGCCgcaucgagccaACCGGCGCGc -3'
miRNA:   3'- -GC-CGACGC-GUCGGaaag-------UGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 36882 0.68 0.345398
Target:  5'- aGGCgacgGCGCAGU---UCAaCAGCGCGc -3'
miRNA:   3'- gCCGa---CGCGUCGgaaAGUgGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 3124 0.68 0.332379
Target:  5'- gCGGCcGCGCGGUgUUcagcguuugcgcgcCGCCAGCGCc -3'
miRNA:   3'- -GCCGaCGCGUCGgAAa-------------GUGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 29003 0.68 0.327591
Target:  5'- uCGGCgugcgcaucgcGCGCGGCUagcacgauaACCAGCGCGa -3'
miRNA:   3'- -GCCGa----------CGCGUCGGaaag-----UGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 2675 0.69 0.313534
Target:  5'- cCGGCaGCuuGCAGCgUcgCGCCGGCgGCGg -3'
miRNA:   3'- -GCCGaCG--CGUCGgAaaGUGGUCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 8977 0.69 0.313534
Target:  5'- aCGGgaGCGCgGGCCgugCuGCCGGUGCa -3'
miRNA:   3'- -GCCgaCGCG-UCGGaaaG-UGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 18270 0.69 0.312
Target:  5'- gCGGCcgaggaugccgcGCGCGGCCcgaUCGCgCAGCGCu -3'
miRNA:   3'- -GCCGa-----------CGCGUCGGaa-AGUG-GUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 27689 0.69 0.298456
Target:  5'- gCGGUUGCGCGGCagc-CGCCGGgaCGCu -3'
miRNA:   3'- -GCCGACGCGUCGgaaaGUGGUC--GCGc -5'
17008 5' -58.9 NC_004333.2 + 15286 0.69 0.29113
Target:  5'- gCGGCgGCGCGGUCagcaucagCACCgGGCGCu -3'
miRNA:   3'- -GCCGaCGCGUCGGaaa-----GUGG-UCGCGc -5'
17008 5' -58.9 NC_004333.2 + 9619 0.69 0.29113
Target:  5'- cCGGUUGCGCAccggcuGCCggcggcgCGCCuGCGCc -3'
miRNA:   3'- -GCCGACGCGU------CGGaaa----GUGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 18518 0.69 0.29113
Target:  5'- -cGCUGCaGCGGCCUUcgcaGCCGGCgGCa -3'
miRNA:   3'- gcCGACG-CGUCGGAAag--UGGUCG-CGc -5'
17008 5' -58.9 NC_004333.2 + 18212 0.69 0.29113
Target:  5'- uGGCaGCGCGGCCgcgcUCGgCAcGCGCu -3'
miRNA:   3'- gCCGaCGCGUCGGaa--AGUgGU-CGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.