miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 5' -58.9 NC_004333.2 + 14558 0.67 0.415829
Target:  5'- aCGGCUGCGCAGUUUg---UgAGCGUa -3'
miRNA:   3'- -GCCGACGCGUCGGAaaguGgUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 31075 0.67 0.415829
Target:  5'- uCGGCUGacagguagaccuUGUGGCCcggUUCGCCgauguuccGGCGCGg -3'
miRNA:   3'- -GCCGAC------------GCGUCGGa--AAGUGG--------UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 577 0.67 0.415829
Target:  5'- uCGGCgacGCGCAGCUgaaugaaCGCCuGCGgGu -3'
miRNA:   3'- -GCCGa--CGCGUCGGaaa----GUGGuCGCgC- -5'
17008 5' -58.9 NC_004333.2 + 32522 0.67 0.406554
Target:  5'- cCGGaaGCGUuuGCCgacgUCGCgCGGCGCGc -3'
miRNA:   3'- -GCCgaCGCGu-CGGaa--AGUG-GUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 46194 0.67 0.406554
Target:  5'- gGGCUGgGCGcGUCUcgCGCCGGaucaGCGc -3'
miRNA:   3'- gCCGACgCGU-CGGAaaGUGGUCg---CGC- -5'
17008 5' -58.9 NC_004333.2 + 28546 0.67 0.406554
Target:  5'- aCGGCcaGCGuCGGCCgcgcUCGCC-GCGCu -3'
miRNA:   3'- -GCCGa-CGC-GUCGGaa--AGUGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 47882 0.67 0.406554
Target:  5'- -uGCUG-GCAGCCUUcgcauUCGCaCGGCGgGg -3'
miRNA:   3'- gcCGACgCGUCGGAA-----AGUG-GUCGCgC- -5'
17008 5' -58.9 NC_004333.2 + 22106 0.67 0.397409
Target:  5'- cCGGaaGCGCcGCCg--CugCGGCGCc -3'
miRNA:   3'- -GCCgaCGCGuCGGaaaGugGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 11224 0.67 0.388397
Target:  5'- uCGG--GCGCGGCUccUUGCCGGCGCu -3'
miRNA:   3'- -GCCgaCGCGUCGGaaAGUGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 40317 0.67 0.388397
Target:  5'- gGGCgaGCGCgAGCUggaaaUgGCCGGCGCa -3'
miRNA:   3'- gCCGa-CGCG-UCGGaa---AgUGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 45730 0.67 0.388397
Target:  5'- uCGGC-GCGCAGgUgUUCGCC-GCGCc -3'
miRNA:   3'- -GCCGaCGCGUCgGaAAGUGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 25574 0.67 0.388397
Target:  5'- -aGCUGCGCAaacagcGCCUgcCACgCAGCGaCGa -3'
miRNA:   3'- gcCGACGCGU------CGGAaaGUG-GUCGC-GC- -5'
17008 5' -58.9 NC_004333.2 + 38371 0.67 0.388397
Target:  5'- aCGcGCUGuCGCGuGUCgggugCGCCGGCGUGa -3'
miRNA:   3'- -GC-CGAC-GCGU-CGGaaa--GUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 45970 0.67 0.379521
Target:  5'- gCGGCgagGCGUggugucccGGCCUgcCACuCGGCGCc -3'
miRNA:   3'- -GCCGa--CGCG--------UCGGAaaGUG-GUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 17159 0.67 0.379521
Target:  5'- -uGCUGCaGCAGCUgcagcgCACCuaccGCGCGa -3'
miRNA:   3'- gcCGACG-CGUCGGaaa---GUGGu---CGCGC- -5'
17008 5' -58.9 NC_004333.2 + 2427 0.68 0.370781
Target:  5'- gCGGCaGCGU-GCCUUgguaCGGCGCGg -3'
miRNA:   3'- -GCCGaCGCGuCGGAAagugGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 30475 0.68 0.370781
Target:  5'- aCGGCUGCGCcuaCCUUgucgaGCCcgAGCGUGc -3'
miRNA:   3'- -GCCGACGCGuc-GGAAag---UGG--UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 1977 0.68 0.370781
Target:  5'- -uGCUGCaguugcgaguucGUAGCgUUaCGCCGGCGCGg -3'
miRNA:   3'- gcCGACG------------CGUCGgAAaGUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 999 0.68 0.370781
Target:  5'- -uGCUGCGCGGCagcgcgUUCuuCCGGCGUc -3'
miRNA:   3'- gcCGACGCGUCGga----AAGu-GGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 21319 0.68 0.370781
Target:  5'- gGGCU-CGCAGUg-UUUGCCgAGCGCGa -3'
miRNA:   3'- gCCGAcGCGUCGgaAAGUGG-UCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.