Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17008 | 5' | -58.9 | NC_004333.2 | + | 29003 | 0.68 | 0.327591 |
Target: 5'- uCGGCgugcgcaucgcGCGCGGCUagcacgauaACCAGCGCGa -3' miRNA: 3'- -GCCGa----------CGCGUCGGaaag-----UGGUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 9619 | 0.69 | 0.29113 |
Target: 5'- cCGGUUGCGCAccggcuGCCggcggcgCGCCuGCGCc -3' miRNA: 3'- -GCCGACGCGU------CGGaaa----GUGGuCGCGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 39180 | 0.71 | 0.237551 |
Target: 5'- cCGuGCUGCGCGcGCUg--CACCGGCaGCa -3' miRNA: 3'- -GC-CGACGCGU-CGGaaaGUGGUCG-CGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 13914 | 0.74 | 0.150899 |
Target: 5'- gCGGCUGCcguggcgaucGUGGCCgcugcCGCCAGCGUGg -3' miRNA: 3'- -GCCGACG----------CGUCGGaaa--GUGGUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 38371 | 0.67 | 0.388397 |
Target: 5'- aCGcGCUGuCGCGuGUCgggugCGCCGGCGUGa -3' miRNA: 3'- -GC-CGAC-GCGU-CGGaaa--GUGGUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 25404 | 0.68 | 0.353719 |
Target: 5'- cCGGCgaGCGC-GCCUgcagcgUGCCGGCgGCGg -3' miRNA: 3'- -GCCGa-CGCGuCGGAaa----GUGGUCG-CGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 1641 | 0.7 | 0.276902 |
Target: 5'- uCGGCgGCGUAGCCcugaaugCGCU-GCGCGg -3' miRNA: 3'- -GCCGaCGCGUCGGaaa----GUGGuCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 29974 | 0.74 | 0.146818 |
Target: 5'- gCGGCcGCGCuGCCaccggCGCCgAGCGCGa -3' miRNA: 3'- -GCCGaCGCGuCGGaaa--GUGG-UCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 8218 | 0.68 | 0.353719 |
Target: 5'- -cGCUGCGCGGCaggaUgaCGCCGgcccGCGCGa -3' miRNA: 3'- gcCGACGCGUCGg---AaaGUGGU----CGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 9429 | 0.79 | 0.057598 |
Target: 5'- gGGCUGCGCAcGCCguccggUUCGCCguccugcgcaccaGGCGCGg -3' miRNA: 3'- gCCGACGCGU-CGGa-----AAGUGG-------------UCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 15286 | 0.69 | 0.29113 |
Target: 5'- gCGGCgGCGCGGUCagcaucagCACCgGGCGCu -3' miRNA: 3'- -GCCGaCGCGUCGGaaa-----GUGG-UCGCGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 33295 | 0.68 | 0.34871 |
Target: 5'- gCGcGUUGCGuCGGCCgcaucgagccaACCGGCGCGc -3' miRNA: 3'- -GC-CGACGC-GUCGGaaag-------UGGUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 11914 | 0.7 | 0.263235 |
Target: 5'- cCGGCaUGCGCAGCggcgcgcgCGCCAuuacGCGCGc -3' miRNA: 3'- -GCCG-ACGCGUCGgaaa----GUGGU----CGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 20444 | 0.7 | 0.243769 |
Target: 5'- uCGGCgGCGCgaAGCCUg-CGCCGGuCGUGa -3' miRNA: 3'- -GCCGaCGCG--UCGGAaaGUGGUC-GCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 28850 | 0.72 | 0.187404 |
Target: 5'- cCGGCUGCGUucguAGCCggcgCGCUcaAGCGCu -3' miRNA: 3'- -GCCGACGCG----UCGGaaa-GUGG--UCGCGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 15498 | 0.73 | 0.155082 |
Target: 5'- gGGCUGCucGCGGCgg-UCACCGGCgGCGc -3' miRNA: 3'- gCCGACG--CGUCGgaaAGUGGUCG-CGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 14667 | 0.67 | 0.415829 |
Target: 5'- gCGGCgcauuucGCGCAGCUUgUCGgCCgAGUGCa -3' miRNA: 3'- -GCCGa------CGCGUCGGAaAGU-GG-UCGCGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 46194 | 0.67 | 0.406554 |
Target: 5'- gGGCUGgGCGcGUCUcgCGCCGGaucaGCGc -3' miRNA: 3'- gCCGACgCGU-CGGAaaGUGGUCg---CGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 45970 | 0.67 | 0.379521 |
Target: 5'- gCGGCgagGCGUggugucccGGCCUgcCACuCGGCGCc -3' miRNA: 3'- -GCCGa--CGCG--------UCGGAaaGUG-GUCGCGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 2427 | 0.68 | 0.370781 |
Target: 5'- gCGGCaGCGU-GCCUUgguaCGGCGCGg -3' miRNA: 3'- -GCCGaCGCGuCGGAAagugGUCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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