miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 5' -58.9 NC_004333.2 + 30124 0.71 0.231467
Target:  5'- uCGGaCUGCGCAGCagcg-GgCAGCGCGa -3'
miRNA:   3'- -GCC-GACGCGUCGgaaagUgGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 39180 0.71 0.237551
Target:  5'- cCGuGCUGCGCGcGCUg--CACCGGCaGCa -3'
miRNA:   3'- -GC-CGACGCGU-CGGaaaGUGGUCG-CGc -5'
17008 5' -58.9 NC_004333.2 + 33869 0.7 0.243769
Target:  5'- -cGCUGCuGCAGCCgagUCGgCCAGCGaCa -3'
miRNA:   3'- gcCGACG-CGUCGGaa-AGU-GGUCGC-Gc -5'
17008 5' -58.9 NC_004333.2 + 31092 0.7 0.243769
Target:  5'- aGGUucgGCGCcuGGCCcgUCAgCGGCGCGa -3'
miRNA:   3'- gCCGa--CGCG--UCGGaaAGUgGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 20444 0.7 0.243769
Target:  5'- uCGGCgGCGCgaAGCCUg-CGCCGGuCGUGa -3'
miRNA:   3'- -GCCGaCGCG--UCGGAaaGUGGUC-GCGC- -5'
17008 5' -58.9 NC_004333.2 + 30891 0.7 0.246294
Target:  5'- -cGCUGCGcCGGCCggcgUUCACgucgaaggcaaucugCAGCGCGu -3'
miRNA:   3'- gcCGACGC-GUCGGa---AAGUG---------------GUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 22285 0.7 0.25661
Target:  5'- gCGGCgaaGCGCGGCgCUUggcgcucgcgCACCaAGCGCu -3'
miRNA:   3'- -GCCGa--CGCGUCG-GAAa---------GUGG-UCGCGc -5'
17008 5' -58.9 NC_004333.2 + 11914 0.7 0.263235
Target:  5'- cCGGCaUGCGCAGCggcgcgcgCGCCAuuacGCGCGc -3'
miRNA:   3'- -GCCG-ACGCGUCGgaaa----GUGGU----CGCGC- -5'
17008 5' -58.9 NC_004333.2 + 27426 0.7 0.269999
Target:  5'- aGGC-GCGCAGCCgcgUCggcgauguccGgCAGCGCGc -3'
miRNA:   3'- gCCGaCGCGUCGGaa-AG----------UgGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 5466 0.7 0.269999
Target:  5'- -cGUUGCGCAGCCacUUCGCUucGGCGUa -3'
miRNA:   3'- gcCGACGCGUCGGa-AAGUGG--UCGCGc -5'
17008 5' -58.9 NC_004333.2 + 40847 0.7 0.269999
Target:  5'- aGGC-GCGC-GCCUUcuggUCGCCGGCGaUGg -3'
miRNA:   3'- gCCGaCGCGuCGGAA----AGUGGUCGC-GC- -5'
17008 5' -58.9 NC_004333.2 + 16940 0.7 0.269999
Target:  5'- aCGGCgcugcgccGCGCGGCCgucgCGCCGGCa-- -3'
miRNA:   3'- -GCCGa-------CGCGUCGGaaa-GUGGUCGcgc -5'
17008 5' -58.9 NC_004333.2 + 1641 0.7 0.276902
Target:  5'- uCGGCgGCGUAGCCcugaaugCGCU-GCGCGg -3'
miRNA:   3'- -GCCGaCGCGUCGGaaa----GUGGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 41507 0.69 0.283946
Target:  5'- gCGGCggaUGCGC-GCCUgcucgagcgCGCCgAGCGCGc -3'
miRNA:   3'- -GCCG---ACGCGuCGGAaa-------GUGG-UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 38551 0.69 0.283946
Target:  5'- aGGC-GCGCcGCCggcaGCCGGUGCGc -3'
miRNA:   3'- gCCGaCGCGuCGGaaagUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 18518 0.69 0.29113
Target:  5'- -cGCUGCaGCGGCCUUcgcaGCCGGCgGCa -3'
miRNA:   3'- gcCGACG-CGUCGGAAag--UGGUCG-CGc -5'
17008 5' -58.9 NC_004333.2 + 9619 0.69 0.29113
Target:  5'- cCGGUUGCGCAccggcuGCCggcggcgCGCCuGCGCc -3'
miRNA:   3'- -GCCGACGCGU------CGGaaa----GUGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 15286 0.69 0.29113
Target:  5'- gCGGCgGCGCGGUCagcaucagCACCgGGCGCu -3'
miRNA:   3'- -GCCGaCGCGUCGGaaa-----GUGG-UCGCGc -5'
17008 5' -58.9 NC_004333.2 + 18212 0.69 0.29113
Target:  5'- uGGCaGCGCGGCCgcgcUCGgCAcGCGCu -3'
miRNA:   3'- gCCGaCGCGUCGGaa--AGUgGU-CGCGc -5'
17008 5' -58.9 NC_004333.2 + 27689 0.69 0.298456
Target:  5'- gCGGUUGCGCGGCagc-CGCCGGgaCGCu -3'
miRNA:   3'- -GCCGACGCGUCGgaaaGUGGUC--GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.