Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17008 | 5' | -58.9 | NC_004333.2 | + | 41869 | 1.08 | 0.000379 |
Target: 5'- aCGGCUGCGCAGCCUUUCACCAGCGCGc -3' miRNA: 3'- -GCCGACGCGUCGGAAAGUGGUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 6318 | 0.81 | 0.043356 |
Target: 5'- aGGCUGCGCAGCCgugaggacgaccgCACC-GCGCGa -3' miRNA: 3'- gCCGACGCGUCGGaaa----------GUGGuCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 9429 | 0.79 | 0.057598 |
Target: 5'- gGGCUGCGCAcGCCguccggUUCGCCguccugcgcaccaGGCGCGg -3' miRNA: 3'- gCCGACGCGU-CGGa-----AAGUGG-------------UCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 29974 | 0.74 | 0.146818 |
Target: 5'- gCGGCcGCGCuGCCaccggCGCCgAGCGCGa -3' miRNA: 3'- -GCCGaCGCGuCGGaaa--GUGG-UCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 13914 | 0.74 | 0.150899 |
Target: 5'- gCGGCUGCcguggcgaucGUGGCCgcugcCGCCAGCGUGg -3' miRNA: 3'- -GCCGACG----------CGUCGGaaa--GUGGUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 15498 | 0.73 | 0.155082 |
Target: 5'- gGGCUGCucGCGGCgg-UCACCGGCgGCGc -3' miRNA: 3'- gCCGACG--CGUCGgaaAGUGGUCG-CGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 39310 | 0.73 | 0.163764 |
Target: 5'- gGGCUG-GCAGCCgaUUCGCuCGGCgGCGg -3' miRNA: 3'- gCCGACgCGUCGGa-AAGUG-GUCG-CGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 20762 | 0.73 | 0.167357 |
Target: 5'- gCGGCUGCGC-GCCUgaacgucgacaCGCCuGCGCu -3' miRNA: 3'- -GCCGACGCGuCGGAaa---------GUGGuCGCGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 19272 | 0.73 | 0.168267 |
Target: 5'- aCGGCaaguaUGCGcCGGCCUg-CGCCgAGCGCGa -3' miRNA: 3'- -GCCG-----ACGC-GUCGGAaaGUGG-UCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 28850 | 0.72 | 0.187404 |
Target: 5'- cCGGCUGCGUucguAGCCggcgCGCUcaAGCGCu -3' miRNA: 3'- -GCCGACGCG----UCGGaaa-GUGG--UCGCGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 29660 | 0.72 | 0.192479 |
Target: 5'- cCGGCUGCGaaGGCCg--CugCAGCGUc -3' miRNA: 3'- -GCCGACGCg-UCGGaaaGugGUCGCGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 47980 | 0.72 | 0.197675 |
Target: 5'- uCGGCggUGUGCGGCUgugcuaCAUCGGCGCGu -3' miRNA: 3'- -GCCG--ACGCGUCGGaaa---GUGGUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 28445 | 0.72 | 0.202992 |
Target: 5'- aCGGCagcgGCGCcGUCUUgcacgcCACCAGCGCc -3' miRNA: 3'- -GCCGa---CGCGuCGGAAa-----GUGGUCGCGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 16884 | 0.72 | 0.202992 |
Target: 5'- uCGGCgcagGUGCGGCCggucUCGCCGGCa-- -3' miRNA: 3'- -GCCGa---CGCGUCGGaa--AGUGGUCGcgc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 45484 | 0.71 | 0.208433 |
Target: 5'- uCGGcCUGU-CGGCCgc-CGCCGGCGCGa -3' miRNA: 3'- -GCC-GACGcGUCGGaaaGUGGUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 7534 | 0.71 | 0.208433 |
Target: 5'- uCGGCcGCuuCGGCCUgaUACCAGCGUGg -3' miRNA: 3'- -GCCGaCGc-GUCGGAaaGUGGUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 692 | 0.71 | 0.219692 |
Target: 5'- cCGGCgccucguucaGCGCGGCagucgcCGCCGGCGCGu -3' miRNA: 3'- -GCCGa---------CGCGUCGgaaa--GUGGUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 36121 | 0.71 | 0.219692 |
Target: 5'- aGGUUgGCGaCGGCCUgcgCgACCGGCGCa -3' miRNA: 3'- gCCGA-CGC-GUCGGAaa-G-UGGUCGCGc -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 34277 | 0.71 | 0.22317 |
Target: 5'- aCGGCagccgccGCGCAGCCcgugccggccgacUUCGCgCGGCGCGg -3' miRNA: 3'- -GCCGa------CGCGUCGGa------------AAGUG-GUCGCGC- -5' |
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17008 | 5' | -58.9 | NC_004333.2 | + | 28673 | 0.71 | 0.225515 |
Target: 5'- aCGGCcacgaGCGCcGCCagcgCGCCAGCGCc -3' miRNA: 3'- -GCCGa----CGCGuCGGaaa-GUGGUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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