miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 5' -58.9 NC_004333.2 + 577 0.67 0.415829
Target:  5'- uCGGCgacGCGCAGCUgaaugaaCGCCuGCGgGu -3'
miRNA:   3'- -GCCGa--CGCGUCGGaaa----GUGGuCGCgC- -5'
17008 5' -58.9 NC_004333.2 + 692 0.71 0.219692
Target:  5'- cCGGCgccucguucaGCGCGGCagucgcCGCCGGCGCGu -3'
miRNA:   3'- -GCCGa---------CGCGUCGgaaa--GUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 999 0.68 0.370781
Target:  5'- -uGCUGCGCGGCagcgcgUUCuuCCGGCGUc -3'
miRNA:   3'- gcCGACGCGUCGga----AAGu-GGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 1230 0.68 0.353719
Target:  5'- uCGGCgcGCGCcGCCUUggCugC-GCGCGa -3'
miRNA:   3'- -GCCGa-CGCGuCGGAAa-GugGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 1641 0.7 0.276902
Target:  5'- uCGGCgGCGUAGCCcugaaugCGCU-GCGCGg -3'
miRNA:   3'- -GCCGaCGCGUCGGaaa----GUGGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 1977 0.68 0.370781
Target:  5'- -uGCUGCaguugcgaguucGUAGCgUUaCGCCGGCGCGg -3'
miRNA:   3'- gcCGACG------------CGUCGgAAaGUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 2427 0.68 0.370781
Target:  5'- gCGGCaGCGU-GCCUUgguaCGGCGCGg -3'
miRNA:   3'- -GCCGaCGCGuCGGAAagugGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 2675 0.69 0.313534
Target:  5'- cCGGCaGCuuGCAGCgUcgCGCCGGCgGCGg -3'
miRNA:   3'- -GCCGaCG--CGUCGgAaaGUGGUCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 3124 0.68 0.332379
Target:  5'- gCGGCcGCGCGGUgUUcagcguuugcgcgcCGCCAGCGCc -3'
miRNA:   3'- -GCCGaCGCGUCGgAAa-------------GUGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 5165 0.66 0.455171
Target:  5'- uCGaGCaGCGCAGCUUgcgccugauugaacaUCGCCugcaGGCGCGg -3'
miRNA:   3'- -GC-CGaCGCGUCGGAa--------------AGUGG----UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 5466 0.7 0.269999
Target:  5'- -cGUUGCGCAGCCacUUCGCUucGGCGUa -3'
miRNA:   3'- gcCGACGCGUCGGa-AAGUGG--UCGCGc -5'
17008 5' -58.9 NC_004333.2 + 5543 0.66 0.464074
Target:  5'- uGGCcgGCGaCGGCUUggCGCgAGUGCa -3'
miRNA:   3'- gCCGa-CGC-GUCGGAaaGUGgUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 6318 0.81 0.043356
Target:  5'- aGGCUGCGCAGCCgugaggacgaccgCACC-GCGCGa -3'
miRNA:   3'- gCCGACGCGUCGGaaa----------GUGGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 7534 0.71 0.208433
Target:  5'- uCGGCcGCuuCGGCCUgaUACCAGCGUGg -3'
miRNA:   3'- -GCCGaCGc-GUCGGAaaGUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 7848 0.66 0.454187
Target:  5'- gCGGcCUGCGcCGGCCaUUUCcaGCUcGCGCu -3'
miRNA:   3'- -GCC-GACGC-GUCGG-AAAG--UGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 8218 0.68 0.353719
Target:  5'- -cGCUGCGCGGCaggaUgaCGCCGgcccGCGCGa -3'
miRNA:   3'- gcCGACGCGUCGg---AaaGUGGU----CGCGC- -5'
17008 5' -58.9 NC_004333.2 + 8780 0.66 0.444416
Target:  5'- uGGCgaaGuCGCcggcaauGCCUUgCGCCGGCGUGa -3'
miRNA:   3'- gCCGa--C-GCGu------CGGAAaGUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 8932 0.67 0.425234
Target:  5'- gCGGCUucguucgcgccgGCGCuGUCcaUCGCguGCGCGg -3'
miRNA:   3'- -GCCGA------------CGCGuCGGaaAGUGguCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 8977 0.69 0.313534
Target:  5'- aCGGgaGCGCgGGCCgugCuGCCGGUGCa -3'
miRNA:   3'- -GCCgaCGCG-UCGGaaaG-UGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 9429 0.79 0.057598
Target:  5'- gGGCUGCGCAcGCCguccggUUCGCCguccugcgcaccaGGCGCGg -3'
miRNA:   3'- gCCGACGCGU-CGGa-----AAGUGG-------------UCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.