miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 5' -58.9 NC_004333.2 + 47980 0.72 0.197675
Target:  5'- uCGGCggUGUGCGGCUgugcuaCAUCGGCGCGu -3'
miRNA:   3'- -GCCG--ACGCGUCGGaaa---GUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 47882 0.67 0.406554
Target:  5'- -uGCUG-GCAGCCUUcgcauUCGCaCGGCGgGg -3'
miRNA:   3'- gcCGACgCGUCGGAA-----AGUG-GUCGCgC- -5'
17008 5' -58.9 NC_004333.2 + 46194 0.67 0.406554
Target:  5'- gGGCUGgGCGcGUCUcgCGCCGGaucaGCGc -3'
miRNA:   3'- gCCGACgCGU-CGGAaaGUGGUCg---CGC- -5'
17008 5' -58.9 NC_004333.2 + 45970 0.67 0.379521
Target:  5'- gCGGCgagGCGUggugucccGGCCUgcCACuCGGCGCc -3'
miRNA:   3'- -GCCGa--CGCG--------UCGGAaaGUG-GUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 45730 0.67 0.388397
Target:  5'- uCGGC-GCGCAGgUgUUCGCC-GCGCc -3'
miRNA:   3'- -GCCGaCGCGUCgGaAAGUGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 45484 0.71 0.208433
Target:  5'- uCGGcCUGU-CGGCCgc-CGCCGGCGCGa -3'
miRNA:   3'- -GCC-GACGcGUCGGaaaGUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 45044 0.66 0.474072
Target:  5'- gCGGC-GCGCAaacGCUgaaCACC-GCGCGg -3'
miRNA:   3'- -GCCGaCGCGU---CGGaaaGUGGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 44974 0.66 0.434763
Target:  5'- gCGGC-GCGCcgGGCCggcUCACCGGCc-- -3'
miRNA:   3'- -GCCGaCGCG--UCGGaa-AGUGGUCGcgc -5'
17008 5' -58.9 NC_004333.2 + 43635 0.66 0.464074
Target:  5'- aCGGCccgUGCGUccGGCCUgcacCACCAGgauCGCa -3'
miRNA:   3'- -GCCG---ACGCG--UCGGAaa--GUGGUC---GCGc -5'
17008 5' -58.9 NC_004333.2 + 41869 1.08 0.000379
Target:  5'- aCGGCUGCGCAGCCUUUCACCAGCGCGc -3'
miRNA:   3'- -GCCGACGCGUCGGAAAGUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 41507 0.69 0.283946
Target:  5'- gCGGCggaUGCGC-GCCUgcucgagcgCGCCgAGCGCGc -3'
miRNA:   3'- -GCCG---ACGCGuCGGAaa-------GUGG-UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 40847 0.7 0.269999
Target:  5'- aGGC-GCGC-GCCUUcuggUCGCCGGCGaUGg -3'
miRNA:   3'- gCCGaCGCGuCGGAA----AGUGGUCGC-GC- -5'
17008 5' -58.9 NC_004333.2 + 40317 0.67 0.388397
Target:  5'- gGGCgaGCGCgAGCUggaaaUgGCCGGCGCa -3'
miRNA:   3'- gCCGa-CGCG-UCGGaa---AgUGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 39310 0.73 0.163764
Target:  5'- gGGCUG-GCAGCCgaUUCGCuCGGCgGCGg -3'
miRNA:   3'- gCCGACgCGUCGGa-AAGUG-GUCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 39180 0.71 0.237551
Target:  5'- cCGuGCUGCGCGcGCUg--CACCGGCaGCa -3'
miRNA:   3'- -GC-CGACGCGU-CGGaaaGUGGUCG-CGc -5'
17008 5' -58.9 NC_004333.2 + 38757 0.68 0.36218
Target:  5'- aCGGCgUGCGCAGCC---CGCagGGCaGCGa -3'
miRNA:   3'- -GCCG-ACGCGUCGGaaaGUGg-UCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 38712 0.68 0.36218
Target:  5'- gCGGCgGUGCGGCacccgCGCCugguGCGCa -3'
miRNA:   3'- -GCCGaCGCGUCGgaaa-GUGGu---CGCGc -5'
17008 5' -58.9 NC_004333.2 + 38551 0.69 0.283946
Target:  5'- aGGC-GCGCcGCCggcaGCCGGUGCGc -3'
miRNA:   3'- gCCGaCGCGuCGGaaagUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 38371 0.67 0.388397
Target:  5'- aCGcGCUGuCGCGuGUCgggugCGCCGGCGUGa -3'
miRNA:   3'- -GC-CGAC-GCGU-CGGaaa--GUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 36882 0.68 0.345398
Target:  5'- aGGCgacgGCGCAGU---UCAaCAGCGCGc -3'
miRNA:   3'- gCCGa---CGCGUCGgaaAGUgGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.