miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 5' -58.9 NC_004333.2 + 6318 0.81 0.043356
Target:  5'- aGGCUGCGCAGCCgugaggacgaccgCACC-GCGCGa -3'
miRNA:   3'- gCCGACGCGUCGGaaa----------GUGGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 1641 0.7 0.276902
Target:  5'- uCGGCgGCGUAGCCcugaaugCGCU-GCGCGg -3'
miRNA:   3'- -GCCGaCGCGUCGGaaa----GUGGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 9619 0.69 0.29113
Target:  5'- cCGGUUGCGCAccggcuGCCggcggcgCGCCuGCGCc -3'
miRNA:   3'- -GCCGACGCGU------CGGaaa----GUGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 32255 0.66 0.484177
Target:  5'- uGGCaGCaGCGGCCgaaaGCCuuccggauGGCGCGg -3'
miRNA:   3'- gCCGaCG-CGUCGGaaagUGG--------UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 15498 0.73 0.155082
Target:  5'- gGGCUGCucGCGGCgg-UCACCGGCgGCGc -3'
miRNA:   3'- gCCGACG--CGUCGgaaAGUGGUCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 39310 0.73 0.163764
Target:  5'- gGGCUG-GCAGCCgaUUCGCuCGGCgGCGg -3'
miRNA:   3'- gCCGACgCGUCGGa-AAGUG-GUCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 28850 0.72 0.187404
Target:  5'- cCGGCUGCGUucguAGCCggcgCGCUcaAGCGCu -3'
miRNA:   3'- -GCCGACGCG----UCGGaaa-GUGG--UCGCGc -5'
17008 5' -58.9 NC_004333.2 + 47980 0.72 0.197675
Target:  5'- uCGGCggUGUGCGGCUgugcuaCAUCGGCGCGu -3'
miRNA:   3'- -GCCG--ACGCGUCGGaaa---GUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 20444 0.7 0.243769
Target:  5'- uCGGCgGCGCgaAGCCUg-CGCCGGuCGUGa -3'
miRNA:   3'- -GCCGaCGCG--UCGGAaaGUGGUC-GCGC- -5'
17008 5' -58.9 NC_004333.2 + 40847 0.7 0.269999
Target:  5'- aGGC-GCGC-GCCUUcuggUCGCCGGCGaUGg -3'
miRNA:   3'- gCCGaCGCGuCGGAA----AGUGGUCGC-GC- -5'
17008 5' -58.9 NC_004333.2 + 33869 0.7 0.243769
Target:  5'- -cGCUGCuGCAGCCgagUCGgCCAGCGaCa -3'
miRNA:   3'- gcCGACG-CGUCGGaa-AGU-GGUCGC-Gc -5'
17008 5' -58.9 NC_004333.2 + 39180 0.71 0.237551
Target:  5'- cCGuGCUGCGCGcGCUg--CACCGGCaGCa -3'
miRNA:   3'- -GC-CGACGCGU-CGGaaaGUGGUCG-CGc -5'
17008 5' -58.9 NC_004333.2 + 9429 0.79 0.057598
Target:  5'- gGGCUGCGCAcGCCguccggUUCGCCguccugcgcaccaGGCGCGg -3'
miRNA:   3'- gCCGACGCGU-CGGa-----AAGUGG-------------UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 11914 0.7 0.263235
Target:  5'- cCGGCaUGCGCAGCggcgcgcgCGCCAuuacGCGCGc -3'
miRNA:   3'- -GCCG-ACGCGUCGgaaa----GUGGU----CGCGC- -5'
17008 5' -58.9 NC_004333.2 + 29974 0.74 0.146818
Target:  5'- gCGGCcGCGCuGCCaccggCGCCgAGCGCGa -3'
miRNA:   3'- -GCCGaCGCGuCGGaaa--GUGG-UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 36121 0.71 0.219692
Target:  5'- aGGUUgGCGaCGGCCUgcgCgACCGGCGCa -3'
miRNA:   3'- gCCGA-CGC-GUCGGAaa-G-UGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 5466 0.7 0.269999
Target:  5'- -cGUUGCGCAGCCacUUCGCUucGGCGUa -3'
miRNA:   3'- gcCGACGCGUCGGa-AAGUGG--UCGCGc -5'
17008 5' -58.9 NC_004333.2 + 15286 0.69 0.29113
Target:  5'- gCGGCgGCGCGGUCagcaucagCACCgGGCGCu -3'
miRNA:   3'- -GCCGaCGCGUCGGaaa-----GUGG-UCGCGc -5'
17008 5' -58.9 NC_004333.2 + 13914 0.74 0.150899
Target:  5'- gCGGCUGCcguggcgaucGUGGCCgcugcCGCCAGCGUGg -3'
miRNA:   3'- -GCCGACG----------CGUCGGaaa--GUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 20762 0.73 0.167357
Target:  5'- gCGGCUGCGC-GCCUgaacgucgacaCGCCuGCGCu -3'
miRNA:   3'- -GCCGACGCGuCGGAaa---------GUGGuCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.