miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 5' -58.9 NC_004333.2 + 8977 0.69 0.313534
Target:  5'- aCGGgaGCGCgGGCCgugCuGCCGGUGCa -3'
miRNA:   3'- -GCCgaCGCG-UCGGaaaG-UGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 999 0.68 0.370781
Target:  5'- -uGCUGCGCGGCagcgcgUUCuuCCGGCGUc -3'
miRNA:   3'- gcCGACGCGUCGga----AAGu-GGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 21319 0.68 0.370781
Target:  5'- gGGCU-CGCAGUg-UUUGCCgAGCGCGa -3'
miRNA:   3'- gCCGAcGCGUCGgaAAGUGG-UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 38757 0.68 0.36218
Target:  5'- aCGGCgUGCGCAGCC---CGCagGGCaGCGa -3'
miRNA:   3'- -GCCG-ACGCGUCGGaaaGUGg-UCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 38712 0.68 0.36218
Target:  5'- gCGGCgGUGCGGCacccgCGCCugguGCGCa -3'
miRNA:   3'- -GCCGaCGCGUCGgaaa-GUGGu---CGCGc -5'
17008 5' -58.9 NC_004333.2 + 23115 0.68 0.36218
Target:  5'- aCGGCaGCGaCAGCgCgaUCAacuaCGGCGCGa -3'
miRNA:   3'- -GCCGaCGC-GUCG-GaaAGUg---GUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 1230 0.68 0.353719
Target:  5'- uCGGCgcGCGCcGCCUUggCugC-GCGCGa -3'
miRNA:   3'- -GCCGa-CGCGuCGGAAa-GugGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 36882 0.68 0.345398
Target:  5'- aGGCgacgGCGCAGU---UCAaCAGCGCGc -3'
miRNA:   3'- gCCGa---CGCGUCGgaaAGUgGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 3124 0.68 0.332379
Target:  5'- gCGGCcGCGCGGUgUUcagcguuugcgcgcCGCCAGCGCc -3'
miRNA:   3'- -GCCGaCGCGUCGgAAa-------------GUGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 17159 0.67 0.379521
Target:  5'- -uGCUGCaGCAGCUgcagcgCACCuaccGCGCGa -3'
miRNA:   3'- gcCGACG-CGUCGGaaa---GUGGu---CGCGC- -5'
17008 5' -58.9 NC_004333.2 + 40317 0.67 0.388397
Target:  5'- gGGCgaGCGCgAGCUggaaaUgGCCGGCGCa -3'
miRNA:   3'- gCCGa-CGCG-UCGGaa---AgUGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 45730 0.67 0.388397
Target:  5'- uCGGC-GCGCAGgUgUUCGCC-GCGCc -3'
miRNA:   3'- -GCCGaCGCGUCgGaAAGUGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 34218 0.66 0.454187
Target:  5'- cCGGCcGC-CGGCCUgaagUCGCCAagGCGg -3'
miRNA:   3'- -GCCGaCGcGUCGGAa---AGUGGUcgCGC- -5'
17008 5' -58.9 NC_004333.2 + 24526 0.66 0.454187
Target:  5'- cCGGCgGCGUuccGCCUcaaggcgaggacUUCAaCGGCGCGu -3'
miRNA:   3'- -GCCGaCGCGu--CGGA------------AAGUgGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 44974 0.66 0.434763
Target:  5'- gCGGC-GCGCcgGGCCggcUCACCGGCc-- -3'
miRNA:   3'- -GCCGaCGCG--UCGGaa-AGUGGUCGcgc -5'
17008 5' -58.9 NC_004333.2 + 31075 0.67 0.415829
Target:  5'- uCGGCUGacagguagaccuUGUGGCCcggUUCGCCgauguuccGGCGCGg -3'
miRNA:   3'- -GCCGAC------------GCGUCGGa--AAGUGG--------UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 14558 0.67 0.415829
Target:  5'- aCGGCUGCGCAGUUUg---UgAGCGUa -3'
miRNA:   3'- -GCCGACGCGUCGGAaaguGgUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 577 0.67 0.415829
Target:  5'- uCGGCgacGCGCAGCUgaaugaaCGCCuGCGgGu -3'
miRNA:   3'- -GCCGa--CGCGUCGGaaa----GUGGuCGCgC- -5'
17008 5' -58.9 NC_004333.2 + 28546 0.67 0.406554
Target:  5'- aCGGCcaGCGuCGGCCgcgcUCGCC-GCGCu -3'
miRNA:   3'- -GCCGa-CGC-GUCGGaa--AGUGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 22106 0.67 0.397409
Target:  5'- cCGGaaGCGCcGCCg--CugCGGCGCc -3'
miRNA:   3'- -GCCgaCGCGuCGGaaaGugGUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.